miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12325 5' -56.3 NC_003324.1 + 16795 0.66 0.660233
Target:  5'- aCUGGcauCCGGCCAGCaGgGUGAc-- -3'
miRNA:   3'- -GACCuauGGCCGGUCGgCgUACUaga -5'
12325 5' -56.3 NC_003324.1 + 53204 0.66 0.616293
Target:  5'- gCUGGcgGCCGGCUucacaacgaaAGCUGCGgaaGUCUc -3'
miRNA:   3'- -GACCuaUGGCCGG----------UCGGCGUac-UAGA- -5'
12325 5' -56.3 NC_003324.1 + 43793 0.67 0.594367
Target:  5'- -aGGGUGCCGggaacGCCGGCaaggCGCGUGAaaUCa -3'
miRNA:   3'- gaCCUAUGGC-----CGGUCG----GCGUACU--AGa -5'
12325 5' -56.3 NC_003324.1 + 14888 0.67 0.572568
Target:  5'- -aGGAagcUGCCGauGCCGGCCGCGU--UCUu -3'
miRNA:   3'- gaCCU---AUGGC--CGGUCGGCGUAcuAGA- -5'
12325 5' -56.3 NC_003324.1 + 34154 0.68 0.540253
Target:  5'- -aGGG-ACCGGCacaAGCCGUAUcGGUCc -3'
miRNA:   3'- gaCCUaUGGCCGg--UCGGCGUA-CUAGa -5'
12325 5' -56.3 NC_003324.1 + 30605 0.68 0.498188
Target:  5'- -aGGAUGCCGcCCGGaaGCAUGGUg- -3'
miRNA:   3'- gaCCUAUGGCcGGUCggCGUACUAga -5'
12325 5' -56.3 NC_003324.1 + 21492 0.69 0.486874
Target:  5'- -cGGAUGCCGcGCCcGUCGCGUugcucaaGGUCg -3'
miRNA:   3'- gaCCUAUGGC-CGGuCGGCGUA-------CUAGa -5'
12325 5' -56.3 NC_003324.1 + 14520 0.69 0.447793
Target:  5'- uUGGAcGCCGGCaugGGCCcagagccggGCGUGAUCc -3'
miRNA:   3'- gACCUaUGGCCGg--UCGG---------CGUACUAGa -5'
12325 5' -56.3 NC_003324.1 + 31694 0.72 0.331469
Target:  5'- gUGGGUGCaugccaacGCCAGCCGuUAUGGUCUg -3'
miRNA:   3'- gACCUAUGgc------CGGUCGGC-GUACUAGA- -5'
12325 5' -56.3 NC_003324.1 + 24376 0.73 0.285789
Target:  5'- cCUGcGAUACgGGCUGGCCGagAUGGUCg -3'
miRNA:   3'- -GAC-CUAUGgCCGGUCGGCg-UACUAGa -5'
12325 5' -56.3 NC_003324.1 + 4789 0.75 0.204059
Target:  5'- uCUGGAUuuCCaGCCAGCCGCccUGGUCg -3'
miRNA:   3'- -GACCUAu-GGcCGGUCGGCGu-ACUAGa -5'
12325 5' -56.3 NC_003324.1 + 42867 0.77 0.14338
Target:  5'- -aGGcUGCCGGCCGGCCcGCGagGAUCUg -3'
miRNA:   3'- gaCCuAUGGCCGGUCGG-CGUa-CUAGA- -5'
12325 5' -56.3 NC_003324.1 + 6367 1.07 0.001052
Target:  5'- gCUGGAUACCGGCCAGCCGCAUGAUCUc -3'
miRNA:   3'- -GACCUAUGGCCGGUCGGCGUACUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.