miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12327 3' -55.8 NC_003324.1 + 8225 1.06 0.001309
Target:  5'- cUAUGAUCGCAGUCGAGCGCGCAGCUGc -3'
miRNA:   3'- -AUACUAGCGUCAGCUCGCGCGUCGAC- -5'
12327 3' -55.8 NC_003324.1 + 28837 0.73 0.261695
Target:  5'- -cUGGUCGCGGUCaGAGaugcggaGCGCGGCg- -3'
miRNA:   3'- auACUAGCGUCAG-CUCg------CGCGUCGac -5'
12327 3' -55.8 NC_003324.1 + 12109 0.71 0.345037
Target:  5'- -cUGAUCGCG---GAGCGCGCGGCc- -3'
miRNA:   3'- auACUAGCGUcagCUCGCGCGUCGac -5'
12327 3' -55.8 NC_003324.1 + 38260 0.71 0.353493
Target:  5'- --cGAUCGCcaucaGGUCggGAGUGCGCGGCa- -3'
miRNA:   3'- auaCUAGCG-----UCAG--CUCGCGCGUCGac -5'
12327 3' -55.8 NC_003324.1 + 15740 0.71 0.362096
Target:  5'- -uUGAUCGCGucaUCGAGCGCGCcggGGCc- -3'
miRNA:   3'- auACUAGCGUc--AGCUCGCGCG---UCGac -5'
12327 3' -55.8 NC_003324.1 + 29101 0.71 0.370843
Target:  5'- --cGGUacCGC-GUCGAGCGCGCuGCUa -3'
miRNA:   3'- auaCUA--GCGuCAGCUCGCGCGuCGAc -5'
12327 3' -55.8 NC_003324.1 + 50036 0.7 0.416689
Target:  5'- --cGAUCGCcaugcuGaCGAGCGUGCuGCUGa -3'
miRNA:   3'- auaCUAGCGu-----CaGCUCGCGCGuCGAC- -5'
12327 3' -55.8 NC_003324.1 + 18996 0.68 0.507225
Target:  5'- -uUGAgcuucUCGaAGuUCGAGCGCGCAGCc- -3'
miRNA:   3'- auACU-----AGCgUC-AGCUCGCGCGUCGac -5'
12327 3' -55.8 NC_003324.1 + 40590 0.68 0.539263
Target:  5'- --cGAUCGUGGcuccaUCGGGCGUGguGCg- -3'
miRNA:   3'- auaCUAGCGUC-----AGCUCGCGCguCGac -5'
12327 3' -55.8 NC_003324.1 + 49894 0.68 0.539263
Target:  5'- --aGAUCGCugcGUCG-GCGCGCucguGCUc -3'
miRNA:   3'- auaCUAGCGu--CAGCuCGCGCGu---CGAc -5'
12327 3' -55.8 NC_003324.1 + 5293 0.67 0.571961
Target:  5'- --gGAUUGCGGUCGccGCGC-CAGCg- -3'
miRNA:   3'- auaCUAGCGUCAGCu-CGCGcGUCGac -5'
12327 3' -55.8 NC_003324.1 + 45234 0.67 0.571961
Target:  5'- --aGAUCGCGGUgGuucauuGCGCGCcaccGGUUGa -3'
miRNA:   3'- auaCUAGCGUCAgCu-----CGCGCG----UCGAC- -5'
12327 3' -55.8 NC_003324.1 + 14981 0.67 0.605109
Target:  5'- -uUGAcCGC-GUCGAGCGCGUcGCc- -3'
miRNA:   3'- auACUaGCGuCAGCUCGCGCGuCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.