Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12327 | 3' | -55.8 | NC_003324.1 | + | 8225 | 1.06 | 0.001309 |
Target: 5'- cUAUGAUCGCAGUCGAGCGCGCAGCUGc -3' miRNA: 3'- -AUACUAGCGUCAGCUCGCGCGUCGAC- -5' |
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12327 | 3' | -55.8 | NC_003324.1 | + | 28837 | 0.73 | 0.261695 |
Target: 5'- -cUGGUCGCGGUCaGAGaugcggaGCGCGGCg- -3' miRNA: 3'- auACUAGCGUCAG-CUCg------CGCGUCGac -5' |
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12327 | 3' | -55.8 | NC_003324.1 | + | 12109 | 0.71 | 0.345037 |
Target: 5'- -cUGAUCGCG---GAGCGCGCGGCc- -3' miRNA: 3'- auACUAGCGUcagCUCGCGCGUCGac -5' |
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12327 | 3' | -55.8 | NC_003324.1 | + | 38260 | 0.71 | 0.353493 |
Target: 5'- --cGAUCGCcaucaGGUCggGAGUGCGCGGCa- -3' miRNA: 3'- auaCUAGCG-----UCAG--CUCGCGCGUCGac -5' |
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12327 | 3' | -55.8 | NC_003324.1 | + | 15740 | 0.71 | 0.362096 |
Target: 5'- -uUGAUCGCGucaUCGAGCGCGCcggGGCc- -3' miRNA: 3'- auACUAGCGUc--AGCUCGCGCG---UCGac -5' |
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12327 | 3' | -55.8 | NC_003324.1 | + | 29101 | 0.71 | 0.370843 |
Target: 5'- --cGGUacCGC-GUCGAGCGCGCuGCUa -3' miRNA: 3'- auaCUA--GCGuCAGCUCGCGCGuCGAc -5' |
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12327 | 3' | -55.8 | NC_003324.1 | + | 50036 | 0.7 | 0.416689 |
Target: 5'- --cGAUCGCcaugcuGaCGAGCGUGCuGCUGa -3' miRNA: 3'- auaCUAGCGu-----CaGCUCGCGCGuCGAC- -5' |
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12327 | 3' | -55.8 | NC_003324.1 | + | 18996 | 0.68 | 0.507225 |
Target: 5'- -uUGAgcuucUCGaAGuUCGAGCGCGCAGCc- -3' miRNA: 3'- auACU-----AGCgUC-AGCUCGCGCGUCGac -5' |
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12327 | 3' | -55.8 | NC_003324.1 | + | 40590 | 0.68 | 0.539263 |
Target: 5'- --cGAUCGUGGcuccaUCGGGCGUGguGCg- -3' miRNA: 3'- auaCUAGCGUC-----AGCUCGCGCguCGac -5' |
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12327 | 3' | -55.8 | NC_003324.1 | + | 49894 | 0.68 | 0.539263 |
Target: 5'- --aGAUCGCugcGUCG-GCGCGCucguGCUc -3' miRNA: 3'- auaCUAGCGu--CAGCuCGCGCGu---CGAc -5' |
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12327 | 3' | -55.8 | NC_003324.1 | + | 5293 | 0.67 | 0.571961 |
Target: 5'- --gGAUUGCGGUCGccGCGC-CAGCg- -3' miRNA: 3'- auaCUAGCGUCAGCu-CGCGcGUCGac -5' |
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12327 | 3' | -55.8 | NC_003324.1 | + | 45234 | 0.67 | 0.571961 |
Target: 5'- --aGAUCGCGGUgGuucauuGCGCGCcaccGGUUGa -3' miRNA: 3'- auaCUAGCGUCAgCu-----CGCGCG----UCGAC- -5' |
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12327 | 3' | -55.8 | NC_003324.1 | + | 14981 | 0.67 | 0.605109 |
Target: 5'- -uUGAcCGC-GUCGAGCGCGUcGCc- -3' miRNA: 3'- auACUaGCGuCAGCUCGCGCGuCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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