Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12327 | 5' | -58.7 | NC_003324.1 | + | 47435 | 0.66 | 0.510728 |
Target: 5'- -cCAGCACAGuaGCGAUaGCGAUCa- -3' miRNA: 3'- aaGUCGUGUCcgCGUUGcCGCUGGca -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 5008 | 0.68 | 0.359151 |
Target: 5'- cUUCGGUcCAGGUGUAGCGGaaGCCGc -3' miRNA: 3'- -AAGUCGuGUCCGCGUUGCCgcUGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 49095 | 0.7 | 0.303451 |
Target: 5'- --aAGCAUGGcCGCGAgGGCGGCCGa -3' miRNA: 3'- aagUCGUGUCcGCGUUgCCGCUGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 8185 | 1.05 | 0.000761 |
Target: 5'- uUUCAGCACAGGCGCAACGGCGACCGUg -3' miRNA: 3'- -AAGUCGUGUCCGCGUUGCCGCUGGCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 21086 | 0.66 | 0.470036 |
Target: 5'- uUUCGGCGC-GGC-CAucauuGCGGCGAuCCGa -3' miRNA: 3'- -AAGUCGUGuCCGcGU-----UGCCGCU-GGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 36528 | 0.67 | 0.46012 |
Target: 5'- --aAGCGCcgcGGGCGCGACGGCauGCCc- -3' miRNA: 3'- aagUCGUG---UCCGCGUUGCCGc-UGGca -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 27461 | 0.67 | 0.440629 |
Target: 5'- cUCAGCGCAGGCcuguaGACGGCacgaaguACCGc -3' miRNA: 3'- aAGUCGUGUCCGcg---UUGCCGc------UGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 30315 | 0.66 | 0.510728 |
Target: 5'- gUCGGCGguGGCGUcgcuCGGCGcguGCUGg -3' miRNA: 3'- aAGUCGUguCCGCGuu--GCCGC---UGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 5632 | 0.66 | 0.510728 |
Target: 5'- -gCGGCGaAGGuUGCGGCGGCaACCGg -3' miRNA: 3'- aaGUCGUgUCC-GCGUUGCCGcUGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 13177 | 0.68 | 0.359151 |
Target: 5'- gUCAGCG-AGGCuGCGuCGGCGGCgGUc -3' miRNA: 3'- aAGUCGUgUCCG-CGUuGCCGCUGgCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 35579 | 0.68 | 0.402193 |
Target: 5'- gUCGGCGCuGGaagcagcCGguACGGCGAUCGc -3' miRNA: 3'- aAGUCGUGuCC-------GCguUGCCGCUGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 52947 | 0.67 | 0.411371 |
Target: 5'- cUCAuGCGCuugagcuuaucgaAGuCGUAGCGGCGGCCGUu -3' miRNA: 3'- aAGU-CGUG-------------UCcGCGUUGCCGCUGGCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 25253 | 0.66 | 0.490186 |
Target: 5'- gUgAGCu---GCGCGACGGCGcCCGUa -3' miRNA: 3'- aAgUCGugucCGCGUUGCCGCuGGCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 47737 | 0.68 | 0.384232 |
Target: 5'- -cCAGCGCAccGGCGUgccacagcucgacGAUGGCGGCCc- -3' miRNA: 3'- aaGUCGUGU--CCGCG-------------UUGCCGCUGGca -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 35230 | 0.66 | 0.489168 |
Target: 5'- -aCGGCGCcgaaggugacgaAGGCGCugaggucAACGGCGACgGc -3' miRNA: 3'- aaGUCGUG------------UCCGCG-------UUGCCGCUGgCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 24166 | 0.67 | 0.431061 |
Target: 5'- aUCAGCGCcaccguGGCGCAGC-GC-ACCGg -3' miRNA: 3'- aAGUCGUGu-----CCGCGUUGcCGcUGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 17556 | 0.68 | 0.376325 |
Target: 5'- cUCAGaCGCucGGCGCGACGGCagGACUu- -3' miRNA: 3'- aAGUC-GUGu-CCGCGUUGCCG--CUGGca -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 53415 | 0.69 | 0.326476 |
Target: 5'- gUCugcGCACGGaugaaguccauGCGCucAACGGCGACCGa -3' miRNA: 3'- aAGu--CGUGUC-----------CGCG--UUGCCGCUGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 31309 | 0.66 | 0.480059 |
Target: 5'- -gCGGCGCuGGCGCuGGCGGgGGCauCGUc -3' miRNA: 3'- aaGUCGUGuCCGCG-UUGCCgCUG--GCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 30378 | 0.67 | 0.449343 |
Target: 5'- gUCGcUACAGGCauguucgGCGGCuugGGCGACCGUg -3' miRNA: 3'- aAGUcGUGUCCG-------CGUUG---CCGCUGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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