miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12328 5' -54.4 NC_003324.1 + 39075 0.66 0.788335
Target:  5'- -aCCGGCUCACucGCUGcGGcugCGCaGGGc -3'
miRNA:   3'- cgGGUCGAGUG--UGACuUCaa-GCG-CCC- -5'
12328 5' -54.4 NC_003324.1 + 15079 0.66 0.788335
Target:  5'- uGCCCGuCUCGCGCUgGAAGUccugCGCa-- -3'
miRNA:   3'- -CGGGUcGAGUGUGA-CUUCAa---GCGccc -5'
12328 5' -54.4 NC_003324.1 + 45830 0.66 0.778441
Target:  5'- gGCUgCGGCgagaACAgUGAGGUggaaacggCGCGGGg -3'
miRNA:   3'- -CGG-GUCGag--UGUgACUUCAa-------GCGCCC- -5'
12328 5' -54.4 NC_003324.1 + 46363 0.66 0.778441
Target:  5'- cGCCgAuGCUUACGCcacuccuugaUGAAGUggCGCGGu -3'
miRNA:   3'- -CGGgU-CGAGUGUG----------ACUUCAa-GCGCCc -5'
12328 5' -54.4 NC_003324.1 + 31315 0.66 0.768397
Target:  5'- cGgCCGGCg-GCGCUGgcGcUgGCGGGg -3'
miRNA:   3'- -CgGGUCGagUGUGACuuCaAgCGCCC- -5'
12328 5' -54.4 NC_003324.1 + 29266 0.67 0.705593
Target:  5'- cGCCgGGCUCGCGCUcGA---UCgGCGGa -3'
miRNA:   3'- -CGGgUCGAGUGUGA-CUucaAG-CGCCc -5'
12328 5' -54.4 NC_003324.1 + 54590 0.68 0.694809
Target:  5'- -gCCGG-UCGCGCUGcAGGcUUCGCGGa -3'
miRNA:   3'- cgGGUCgAGUGUGAC-UUC-AAGCGCCc -5'
12328 5' -54.4 NC_003324.1 + 27751 0.69 0.629217
Target:  5'- aGCUCGGCgcCACGCaUGAGGUggUCGCGa- -3'
miRNA:   3'- -CGGGUCGa-GUGUG-ACUUCA--AGCGCcc -5'
12328 5' -54.4 NC_003324.1 + 40038 0.69 0.585398
Target:  5'- uCCCAGCUCGucggccgucCACcGuAGUUgCGCGGGu -3'
miRNA:   3'- cGGGUCGAGU---------GUGaCuUCAA-GCGCCC- -5'
12328 5' -54.4 NC_003324.1 + 11162 0.69 0.585398
Target:  5'- cGgCCGGCUCGCACagcguUGAGGU--GCGGa -3'
miRNA:   3'- -CgGGUCGAGUGUG-----ACUUCAagCGCCc -5'
12328 5' -54.4 NC_003324.1 + 22863 0.72 0.430251
Target:  5'- cGCCCAGCUCAC---GAAGUggCGCGa- -3'
miRNA:   3'- -CGGGUCGAGUGugaCUUCAa-GCGCcc -5'
12328 5' -54.4 NC_003324.1 + 9694 0.74 0.33306
Target:  5'- cGCCCAGgUCuACAC-GggG-UCGUGGGa -3'
miRNA:   3'- -CGGGUCgAG-UGUGaCuuCaAGCGCCC- -5'
12328 5' -54.4 NC_003324.1 + 9699 1.13 0.0007
Target:  5'- gGCCCAGCUCACACUGAAGUUCGCGGGg -3'
miRNA:   3'- -CGGGUCGAGUGUGACUUCAAGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.