Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12328 | 5' | -54.4 | NC_003324.1 | + | 39075 | 0.66 | 0.788335 |
Target: 5'- -aCCGGCUCACucGCUGcGGcugCGCaGGGc -3' miRNA: 3'- cgGGUCGAGUG--UGACuUCaa-GCG-CCC- -5' |
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12328 | 5' | -54.4 | NC_003324.1 | + | 15079 | 0.66 | 0.788335 |
Target: 5'- uGCCCGuCUCGCGCUgGAAGUccugCGCa-- -3' miRNA: 3'- -CGGGUcGAGUGUGA-CUUCAa---GCGccc -5' |
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12328 | 5' | -54.4 | NC_003324.1 | + | 45830 | 0.66 | 0.778441 |
Target: 5'- gGCUgCGGCgagaACAgUGAGGUggaaacggCGCGGGg -3' miRNA: 3'- -CGG-GUCGag--UGUgACUUCAa-------GCGCCC- -5' |
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12328 | 5' | -54.4 | NC_003324.1 | + | 46363 | 0.66 | 0.778441 |
Target: 5'- cGCCgAuGCUUACGCcacuccuugaUGAAGUggCGCGGu -3' miRNA: 3'- -CGGgU-CGAGUGUG----------ACUUCAa-GCGCCc -5' |
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12328 | 5' | -54.4 | NC_003324.1 | + | 31315 | 0.66 | 0.768397 |
Target: 5'- cGgCCGGCg-GCGCUGgcGcUgGCGGGg -3' miRNA: 3'- -CgGGUCGagUGUGACuuCaAgCGCCC- -5' |
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12328 | 5' | -54.4 | NC_003324.1 | + | 29266 | 0.67 | 0.705593 |
Target: 5'- cGCCgGGCUCGCGCUcGA---UCgGCGGa -3' miRNA: 3'- -CGGgUCGAGUGUGA-CUucaAG-CGCCc -5' |
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12328 | 5' | -54.4 | NC_003324.1 | + | 54590 | 0.68 | 0.694809 |
Target: 5'- -gCCGG-UCGCGCUGcAGGcUUCGCGGa -3' miRNA: 3'- cgGGUCgAGUGUGAC-UUC-AAGCGCCc -5' |
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12328 | 5' | -54.4 | NC_003324.1 | + | 27751 | 0.69 | 0.629217 |
Target: 5'- aGCUCGGCgcCACGCaUGAGGUggUCGCGa- -3' miRNA: 3'- -CGGGUCGa-GUGUG-ACUUCA--AGCGCcc -5' |
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12328 | 5' | -54.4 | NC_003324.1 | + | 40038 | 0.69 | 0.585398 |
Target: 5'- uCCCAGCUCGucggccgucCACcGuAGUUgCGCGGGu -3' miRNA: 3'- cGGGUCGAGU---------GUGaCuUCAA-GCGCCC- -5' |
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12328 | 5' | -54.4 | NC_003324.1 | + | 11162 | 0.69 | 0.585398 |
Target: 5'- cGgCCGGCUCGCACagcguUGAGGU--GCGGa -3' miRNA: 3'- -CgGGUCGAGUGUG-----ACUUCAagCGCCc -5' |
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12328 | 5' | -54.4 | NC_003324.1 | + | 22863 | 0.72 | 0.430251 |
Target: 5'- cGCCCAGCUCAC---GAAGUggCGCGa- -3' miRNA: 3'- -CGGGUCGAGUGugaCUUCAa-GCGCcc -5' |
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12328 | 5' | -54.4 | NC_003324.1 | + | 9694 | 0.74 | 0.33306 |
Target: 5'- cGCCCAGgUCuACAC-GggG-UCGUGGGa -3' miRNA: 3'- -CGGGUCgAG-UGUGaCuuCaAGCGCCC- -5' |
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12328 | 5' | -54.4 | NC_003324.1 | + | 9699 | 1.13 | 0.0007 |
Target: 5'- gGCCCAGCUCACACUGAAGUUCGCGGGg -3' miRNA: 3'- -CGGGUCGAGUGUGACUUCAAGCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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