miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12329 5' -55.9 NC_003324.1 + 24075 0.7 0.480059
Target:  5'- uUCUCGCCGGUgCGcuGCGcCACGGuGg -3'
miRNA:   3'- cAGAGCGGUCA-GCauCGCuGUGCCuC- -5'
12329 5' -55.9 NC_003324.1 + 41868 0.69 0.531621
Target:  5'- cGUCUCGCCGGUCaUGGCGAgcaGCa--- -3'
miRNA:   3'- -CAGAGCGGUCAGcAUCGCUg--UGccuc -5'
12329 5' -55.9 NC_003324.1 + 11148 0.67 0.606743
Target:  5'- -cUUCGCCGGUC-UGGCGGC-CGGc- -3'
miRNA:   3'- caGAGCGGUCAGcAUCGCUGuGCCuc -5'
12329 5' -55.9 NC_003324.1 + 30805 0.67 0.639422
Target:  5'- cGUCUCGCCcagugcccaacGGUCGaUGGCGu--CGGAc -3'
miRNA:   3'- -CAGAGCGG-----------UCAGC-AUCGCuguGCCUc -5'
12329 5' -55.9 NC_003324.1 + 17429 0.67 0.661192
Target:  5'- -cCUCGUCGGUCa---UGACGCGGAGc -3'
miRNA:   3'- caGAGCGGUCAGcaucGCUGUGCCUC- -5'
12329 5' -55.9 NC_003324.1 + 21956 0.66 0.714967
Target:  5'- cUCUCGUCGG-CGgcGCGAUGCaccuuGGAGc -3'
miRNA:   3'- cAGAGCGGUCaGCauCGCUGUG-----CCUC- -5'
12329 5' -55.9 NC_003324.1 + 10691 0.69 0.510728
Target:  5'- ----gGCCAG-CGUugGGCGACugGGGGa -3'
miRNA:   3'- cagagCGGUCaGCA--UCGCUGugCCUC- -5'
12329 5' -55.9 NC_003324.1 + 40067 0.69 0.531621
Target:  5'- -cCUCGCCAcGcUCGgcGCGACGgacuUGGAGa -3'
miRNA:   3'- caGAGCGGU-C-AGCauCGCUGU----GCCUC- -5'
12329 5' -55.9 NC_003324.1 + 56952 0.68 0.552814
Target:  5'- gGUCaCGCCAGUCG-AGUGAuCAUaGGAGc -3'
miRNA:   3'- -CAGaGCGGUCAGCaUCGCU-GUG-CCUC- -5'
12329 5' -55.9 NC_003324.1 + 48281 0.66 0.682855
Target:  5'- cUCUCGUCAGUgGUcucggagaaccAGCGaACGCGGc- -3'
miRNA:   3'- cAGAGCGGUCAgCA-----------UCGC-UGUGCCuc -5'
12329 5' -55.9 NC_003324.1 + 33464 0.66 0.704328
Target:  5'- uUCUcCGCCAGUggcCGgaguuGCG-CGCGGAGc -3'
miRNA:   3'- cAGA-GCGGUCA---GCau---CGCuGUGCCUC- -5'
12329 5' -55.9 NC_003324.1 + 10722 1.07 0.00126
Target:  5'- gGUCUCGCCAGUCGUAGCGACACGGAGc -3'
miRNA:   3'- -CAGAGCGGUCAGCAUCGCUGUGCCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.