miRNA display CGI

Results 1 - 5 of 5 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
1233	3'	-43.6	NC_001271.1	+	6063	0.68	0.990611
	Target:  5'- aGUGUCUuaaAGUgggagaccuuaaguaGUCUCCCgUUAGUGa -3' miRNA:   3'- -CAUAGAuaaUCA---------------CAGAGGGaAAUCAC- -5'
1233	3'	-43.6	NC_001271.1	+	11389	0.69	0.982139
	Target:  5'- -----------aGUCUCCCUUUAGUGa -3' miRNA:   3'- cauagauaaucaCAGAGGGAAAUCAC- -5'
1233	3'	-43.6	NC_001271.1	+	20509	0.71	0.953777
	Target:  5'- --------gAG-GUCUCCCUUUAGUGa -3' miRNA:   3'- cauagauaaUCaCAGAGGGAAAUCAC- -5'
1233	3'	-43.6	NC_001271.1	+	21550	0.8	0.562377
	Target:  5'- -cAUCUA-UGGUcUCUCCCUUUAGUGa -3' miRNA:   3'- caUAGAUaAUCAcAGAGGGAAAUCAC- -5'
1233	3'	-43.6	NC_001271.1	+	26272	1.11	0.007881
	Target:  5'- cGUAUCUAUUAGUGUCUCCCUUUAGUGa -3' miRNA:   3'- -CAUAGAUAAUCACAGAGGGAAAUCAC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home