miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12330 3' -62.1 NC_003324.1 + 11451 0.66 0.397396
Target:  5'- uGGUCUCCacuggaacGcGCAGGGGCacauuGCGGucaaGAGCg -3'
miRNA:   3'- gUCAGAGG--------C-CGUCCUCGg----CGCC----CUCG- -5'
12330 3' -62.1 NC_003324.1 + 2367 0.66 0.387889
Target:  5'- gCAGcCcgCCcGCAGGGgcgggucgcggucGCUGCGGGAGUg -3'
miRNA:   3'- -GUCaGa-GGcCGUCCU-------------CGGCGCCCUCG- -5'
12330 3' -62.1 NC_003324.1 + 51153 0.66 0.366845
Target:  5'- -cGUCUUCaGGCAGGugaccuGCCgcgucaaccugacgaGCGGGGGUu -3'
miRNA:   3'- guCAGAGG-CCGUCCu-----CGG---------------CGCCCUCG- -5'
12330 3' -62.1 NC_003324.1 + 31321 0.67 0.347395
Target:  5'- gCAGUgCggCCGGCGgcgcuGGcGCUgGCGGGGGCa -3'
miRNA:   3'- -GUCA-Ga-GGCCGU-----CCuCGG-CGCCCUCG- -5'
12330 3' -62.1 NC_003324.1 + 34165 0.67 0.331758
Target:  5'- uCGGUCUCauggacagGGC-GGAGCCGCuGGcauuGGGCg -3'
miRNA:   3'- -GUCAGAGg-------CCGuCCUCGGCG-CC----CUCG- -5'
12330 3' -62.1 NC_003324.1 + 16122 0.67 0.316644
Target:  5'- uGGUC-CUGcGCAGGGcGCUucgguaGCGGGGGCc -3'
miRNA:   3'- gUCAGaGGC-CGUCCU-CGG------CGCCCUCG- -5'
12330 3' -62.1 NC_003324.1 + 24525 0.67 0.316644
Target:  5'- aCAuUUUCCGGCAGGguccggauGGCCuuGGaGAGCa -3'
miRNA:   3'- -GUcAGAGGCCGUCC--------UCGGcgCC-CUCG- -5'
12330 3' -62.1 NC_003324.1 + 6103 0.68 0.274445
Target:  5'- -uGUCgUCGGCAGGAGCgGacuGGGcGGCa -3'
miRNA:   3'- guCAGaGGCCGUCCUCGgCg--CCC-UCG- -5'
12330 3' -62.1 NC_003324.1 + 44884 0.7 0.225339
Target:  5'- aAGUCagCGGUAcgccGGGG-CGCGGGGGCu -3'
miRNA:   3'- gUCAGagGCCGU----CCUCgGCGCCCUCG- -5'
12330 3' -62.1 NC_003324.1 + 45958 0.72 0.149328
Target:  5'- aAGcCUCCGGgAGGAGCUGauuaCGGGGGa -3'
miRNA:   3'- gUCaGAGGCCgUCCUCGGC----GCCCUCg -5'
12330 3' -62.1 NC_003324.1 + 16263 0.72 0.14166
Target:  5'- --cUUUCUGGCGGGAGCUGCGGu-GCc -3'
miRNA:   3'- gucAGAGGCCGUCCUCGGCGCCcuCG- -5'
12330 3' -62.1 NC_003324.1 + 11666 1.11 0.000171
Target:  5'- cCAGUCUCCGGCAGGAGCCGCGGGAGCa -3'
miRNA:   3'- -GUCAGAGGCCGUCCUCGGCGCCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.