Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12330 | 5' | -55.2 | NC_003324.1 | + | 11633 | 0.9 | 0.01974 |
Target: 5'- -gGCUGCucgCCCGCAAAGGCCGAAAUCUu -3' miRNA: 3'- gaCGACG---GGGCGUUUCCGGCUUUAGA- -5' |
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12330 | 5' | -55.2 | NC_003324.1 | + | 32383 | 0.78 | 0.140417 |
Target: 5'- aUGCggcGCCgCGCAGAGGCCGuuGUCg -3' miRNA: 3'- gACGa--CGGgGCGUUUCCGGCuuUAGa -5' |
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12330 | 5' | -55.2 | NC_003324.1 | + | 49722 | 0.69 | 0.486321 |
Target: 5'- -cGCUGCCCUGC--AGGCgGGAugguUCa -3' miRNA: 3'- gaCGACGGGGCGuuUCCGgCUUu---AGa -5' |
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12330 | 5' | -55.2 | NC_003324.1 | + | 11579 | 0.69 | 0.507225 |
Target: 5'- aUGCUGCuCCCGCGGcuccuGCCGGAGaCUg -3' miRNA: 3'- gACGACG-GGGCGUUuc---CGGCUUUaGA- -5' |
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12330 | 5' | -55.2 | NC_003324.1 | + | 18365 | 0.69 | 0.528501 |
Target: 5'- -aGCgauUGCCCgCGCGucGGCCGAuuccGUCa -3' miRNA: 3'- gaCG---ACGGG-GCGUuuCCGGCUu---UAGa -5' |
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12330 | 5' | -55.2 | NC_003324.1 | + | 6200 | 0.68 | 0.582972 |
Target: 5'- uUGCUGCgaCCGUcgaagccauGAAGGCCGAGGc-- -3' miRNA: 3'- gACGACGg-GGCG---------UUUCCGGCUUUaga -5' |
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12330 | 5' | -55.2 | NC_003324.1 | + | 49981 | 0.68 | 0.594024 |
Target: 5'- -cGCUGCCCUGaUggGGGCaauGAUCg -3' miRNA: 3'- gaCGACGGGGC-GuuUCCGgcuUUAGa -5' |
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12330 | 5' | -55.2 | NC_003324.1 | + | 32103 | 0.67 | 0.659587 |
Target: 5'- -gGCUcGUCgCCGguGAGGCCGAGugccuugGUCUc -3' miRNA: 3'- gaCGA-CGG-GGCguUUCCGGCUU-------UAGA- -5' |
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12330 | 5' | -55.2 | NC_003324.1 | + | 44010 | 0.66 | 0.693805 |
Target: 5'- -gGCUGCCgCCGgGAucauGCCGAGcgCUg -3' miRNA: 3'- gaCGACGG-GGCgUUuc--CGGCUUuaGA- -5' |
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12330 | 5' | -55.2 | NC_003324.1 | + | 4738 | 0.66 | 0.704735 |
Target: 5'- -gGCUGCUaCgGCgGAAGGCCGAAGc-- -3' miRNA: 3'- gaCGACGG-GgCG-UUUCCGGCUUUaga -5' |
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12330 | 5' | -55.2 | NC_003324.1 | + | 33467 | 0.66 | 0.693805 |
Target: 5'- -aGCUuCUCCGCcaguGGCCGGAGUUg -3' miRNA: 3'- gaCGAcGGGGCGuuu-CCGGCUUUAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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