miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12330 5' -55.2 NC_003324.1 + 11633 0.9 0.01974
Target:  5'- -gGCUGCucgCCCGCAAAGGCCGAAAUCUu -3'
miRNA:   3'- gaCGACG---GGGCGUUUCCGGCUUUAGA- -5'
12330 5' -55.2 NC_003324.1 + 32383 0.78 0.140417
Target:  5'- aUGCggcGCCgCGCAGAGGCCGuuGUCg -3'
miRNA:   3'- gACGa--CGGgGCGUUUCCGGCuuUAGa -5'
12330 5' -55.2 NC_003324.1 + 18365 0.69 0.528501
Target:  5'- -aGCgauUGCCCgCGCGucGGCCGAuuccGUCa -3'
miRNA:   3'- gaCG---ACGGG-GCGUuuCCGGCUu---UAGa -5'
12330 5' -55.2 NC_003324.1 + 33467 0.66 0.693805
Target:  5'- -aGCUuCUCCGCcaguGGCCGGAGUUg -3'
miRNA:   3'- gaCGAcGGGGCGuuu-CCGGCUUUAGa -5'
12330 5' -55.2 NC_003324.1 + 4738 0.66 0.704735
Target:  5'- -gGCUGCUaCgGCgGAAGGCCGAAGc-- -3'
miRNA:   3'- gaCGACGG-GgCG-UUUCCGGCUUUaga -5'
12330 5' -55.2 NC_003324.1 + 44010 0.66 0.693805
Target:  5'- -gGCUGCCgCCGgGAucauGCCGAGcgCUg -3'
miRNA:   3'- gaCGACGG-GGCgUUuc--CGGCUUuaGA- -5'
12330 5' -55.2 NC_003324.1 + 32103 0.67 0.659587
Target:  5'- -gGCUcGUCgCCGguGAGGCCGAGugccuugGUCUc -3'
miRNA:   3'- gaCGA-CGG-GGCguUUCCGGCUU-------UAGA- -5'
12330 5' -55.2 NC_003324.1 + 49981 0.68 0.594024
Target:  5'- -cGCUGCCCUGaUggGGGCaauGAUCg -3'
miRNA:   3'- gaCGACGGGGC-GuuUCCGgcuUUAGa -5'
12330 5' -55.2 NC_003324.1 + 6200 0.68 0.582972
Target:  5'- uUGCUGCgaCCGUcgaagccauGAAGGCCGAGGc-- -3'
miRNA:   3'- gACGACGg-GGCG---------UUUCCGGCUUUaga -5'
12330 5' -55.2 NC_003324.1 + 11579 0.69 0.507225
Target:  5'- aUGCUGCuCCCGCGGcuccuGCCGGAGaCUg -3'
miRNA:   3'- gACGACG-GGGCGUUuc---CGGCUUUaGA- -5'
12330 5' -55.2 NC_003324.1 + 49722 0.69 0.486321
Target:  5'- -cGCUGCCCUGC--AGGCgGGAugguUCa -3'
miRNA:   3'- gaCGACGGGGCGuuUCCGgCUUu---AGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.