Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12331 | 3' | -59.4 | NC_003324.1 | + | 45783 | 0.67 | 0.474265 |
Target: 5'- cCGUCGCCU--GAUUGCCcugcucacgccucGCCgAGCCCc -3' miRNA: 3'- -GCAGCGGAgcUUGACGG-------------UGG-UCGGGc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 2570 | 0.66 | 0.509058 |
Target: 5'- uGUCGCCgcUCGGAgUGCCACUguuucaaugggcgcuAGgCCa -3' miRNA: 3'- gCAGCGG--AGCUUgACGGUGG---------------UCgGGc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 48844 | 0.66 | 0.513104 |
Target: 5'- aGgggCGaCCUUGAGCgcuucgcugaugGCCugCAGCCUGc -3' miRNA: 3'- gCa--GC-GGAGCUUGa-----------CGGugGUCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 45416 | 0.66 | 0.526344 |
Target: 5'- aGUCGCCcccuaaaugguugagCGaAGCUGCUcgaucccagcGCCGGCUCGa -3' miRNA: 3'- gCAGCGGa--------------GC-UUGACGG----------UGGUCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 19735 | 0.66 | 0.529417 |
Target: 5'- aGUCGCggauccuugaggaucUUCGcggcaaacuGACUGaCCugCAGCCCGc -3' miRNA: 3'- gCAGCG---------------GAGC---------UUGAC-GGugGUCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 29645 | 0.66 | 0.535584 |
Target: 5'- aCGagGCCUUGAg--GCCGCUugAGCCCc -3' miRNA: 3'- -GCagCGGAGCUugaCGGUGG--UCGGGc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 14618 | 0.66 | 0.535584 |
Target: 5'- aCGUCgGCCUUGAGC-GCCAgC-GCCUu -3' miRNA: 3'- -GCAG-CGGAGCUUGaCGGUgGuCGGGc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 23632 | 0.66 | 0.535584 |
Target: 5'- cCGUCGCCgagCGcGCccGCCGCCAcGCUg- -3' miRNA: 3'- -GCAGCGGa--GCuUGa-CGGUGGU-CGGgc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 11237 | 0.69 | 0.357756 |
Target: 5'- --aCGCUgugCGAGCcgGCCGCCAGaCCGg -3' miRNA: 3'- gcaGCGGa--GCUUGa-CGGUGGUCgGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 15664 | 0.69 | 0.374464 |
Target: 5'- --cCGCCUUGGcauCUGCCGugUCGGCCCa -3' miRNA: 3'- gcaGCGGAGCUu--GACGGU--GGUCGGGc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 2790 | 0.68 | 0.418485 |
Target: 5'- -aUCGCUUgGAGaCUGCCGCCGccgacaucguGCCCu -3' miRNA: 3'- gcAGCGGAgCUU-GACGGUGGU----------CGGGc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 41581 | 0.67 | 0.446361 |
Target: 5'- cCGg-GCUUCGGAUUGCuCGCCAcgacgagcGCCCGu -3' miRNA: 3'- -GCagCGGAGCUUGACG-GUGGU--------CGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 50926 | 0.69 | 0.357756 |
Target: 5'- uGUCGCUgggCGAACcGCCugCAGCg-- -3' miRNA: 3'- gCAGCGGa--GCUUGaCGGugGUCGggc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 21210 | 0.67 | 0.436953 |
Target: 5'- aCGagGCCgagauGCUGCgcaagCGCCAGCCCGa -3' miRNA: 3'- -GCagCGGagcu-UGACG-----GUGGUCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 42406 | 0.68 | 0.391693 |
Target: 5'- aGUCGCuCUaaguCUGUCACCGgcGCCCGg -3' miRNA: 3'- gCAGCG-GAgcuuGACGGUGGU--CGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 12604 | 1.08 | 0.000525 |
Target: 5'- cCGUCGCCUCGAACUGCCACCAGCCCGu -3' miRNA: 3'- -GCAGCGGAGCUUGACGGUGGUCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 1607 | 0.67 | 0.436953 |
Target: 5'- aG-CGCCgCGcaccACUGCCGCCggauccucgcuGGCCCGg -3' miRNA: 3'- gCaGCGGaGCu---UGACGGUGG-----------UCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 50711 | 0.66 | 0.495005 |
Target: 5'- uCGUgCGCCUCGAuCUGaucguugacgaUCugCAGCUCGu -3' miRNA: 3'- -GCA-GCGGAGCUuGAC-----------GGugGUCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 40586 | 0.69 | 0.374464 |
Target: 5'- uGUCGCC-CGAugUGgUugUGGUCCGg -3' miRNA: 3'- gCAGCGGaGCUugACgGugGUCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 30288 | 0.66 | 0.535584 |
Target: 5'- gGUCGCCcaagccgcCGAACaUGCCugUAGCgacgCCGg -3' miRNA: 3'- gCAGCGGa-------GCUUG-ACGGugGUCG----GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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