miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12331 3' -59.4 NC_003324.1 + 35491 0.66 0.535584
Target:  5'- gCGaUCGCCguacCG-GCUGCUuCCAGCgCCGa -3'
miRNA:   3'- -GC-AGCGGa---GCuUGACGGuGGUCG-GGC- -5'
12331 3' -59.4 NC_003324.1 + 40586 0.69 0.374464
Target:  5'- uGUCGCC-CGAugUGgUugUGGUCCGg -3'
miRNA:   3'- gCAGCGGaGCUugACgGugGUCGGGC- -5'
12331 3' -59.4 NC_003324.1 + 41581 0.67 0.446361
Target:  5'- cCGg-GCUUCGGAUUGCuCGCCAcgacgagcGCCCGu -3'
miRNA:   3'- -GCagCGGAGCUUGACG-GUGGU--------CGGGC- -5'
12331 3' -59.4 NC_003324.1 + 42406 0.68 0.391693
Target:  5'- aGUCGCuCUaaguCUGUCACCGgcGCCCGg -3'
miRNA:   3'- gCAGCG-GAgcuuGACGGUGGU--CGGGC- -5'
12331 3' -59.4 NC_003324.1 + 42846 0.71 0.255123
Target:  5'- --aCGCCguauugcugguauUCGAgGCUGCCgGCCGGCCCGc -3'
miRNA:   3'- gcaGCGG-------------AGCU-UGACGG-UGGUCGGGC- -5'
12331 3' -59.4 NC_003324.1 + 45416 0.66 0.526344
Target:  5'- aGUCGCCcccuaaaugguugagCGaAGCUGCUcgaucccagcGCCGGCUCGa -3'
miRNA:   3'- gCAGCGGa--------------GC-UUGACGG----------UGGUCGGGC- -5'
12331 3' -59.4 NC_003324.1 + 45783 0.67 0.474265
Target:  5'- cCGUCGCCU--GAUUGCCcugcucacgccucGCCgAGCCCc -3'
miRNA:   3'- -GCAGCGGAgcUUGACGG-------------UGG-UCGGGc -5'
12331 3' -59.4 NC_003324.1 + 48844 0.66 0.513104
Target:  5'- aGgggCGaCCUUGAGCgcuucgcugaugGCCugCAGCCUGc -3'
miRNA:   3'- gCa--GC-GGAGCUUGa-----------CGGugGUCGGGC- -5'
12331 3' -59.4 NC_003324.1 + 50711 0.66 0.495005
Target:  5'- uCGUgCGCCUCGAuCUGaucguugacgaUCugCAGCUCGu -3'
miRNA:   3'- -GCA-GCGGAGCUuGAC-----------GGugGUCGGGC- -5'
12331 3' -59.4 NC_003324.1 + 50926 0.69 0.357756
Target:  5'- uGUCGCUgggCGAACcGCCugCAGCg-- -3'
miRNA:   3'- gCAGCGGa--GCUUGaCGGugGUCGggc -5'
12331 3' -59.4 NC_003324.1 + 56556 0.69 0.341577
Target:  5'- aGUUGCCcgCGAcccaUGCCGCC-GCCCa -3'
miRNA:   3'- gCAGCGGa-GCUug--ACGGUGGuCGGGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.