Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12331 | 5' | -57.2 | NC_003324.1 | + | 30093 | 0.66 | 0.580682 |
Target: 5'- gGUGgcGCAGcAUCGCGUcgccagagugcaccGGCCGGGAUc -3' miRNA: 3'- gCGCauCGUC-UGGCGCA--------------CUGGCUCUA- -5' |
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12331 | 5' | -57.2 | NC_003324.1 | + | 49118 | 0.67 | 0.541219 |
Target: 5'- aCGCGaucgccaagaUGGCGGGCCGCucGAUUGAGGUg -3' miRNA: 3'- -GCGC----------AUCGUCUGGCGcaCUGGCUCUA- -5' |
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12331 | 5' | -57.2 | NC_003324.1 | + | 53488 | 0.68 | 0.520257 |
Target: 5'- aGcCGUAGUAGGCgC-CGUGACCGcGAUg -3' miRNA: 3'- gC-GCAUCGUCUG-GcGCACUGGCuCUA- -5' |
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12331 | 5' | -57.2 | NC_003324.1 | + | 33044 | 0.69 | 0.415574 |
Target: 5'- gGCG-AGCAGAUgcagCGCGUGAccuucacgaucacguCCGAGAUg -3' miRNA: 3'- gCGCaUCGUCUG----GCGCACU---------------GGCUCUA- -5' |
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12331 | 5' | -57.2 | NC_003324.1 | + | 29325 | 0.74 | 0.201862 |
Target: 5'- gGCGU--CAGGCCGC-UGACCGAGAg -3' miRNA: 3'- gCGCAucGUCUGGCGcACUGGCUCUa -5' |
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12331 | 5' | -57.2 | NC_003324.1 | + | 12570 | 1.06 | 0.001176 |
Target: 5'- aCGCGUAGCAGACCGCGUGACCGAGAUc -3' miRNA: 3'- -GCGCAUCGUCUGGCGCACUGGCUCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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