miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12331 5' -57.2 NC_003324.1 + 30093 0.66 0.580682
Target:  5'- gGUGgcGCAGcAUCGCGUcgccagagugcaccGGCCGGGAUc -3'
miRNA:   3'- gCGCauCGUC-UGGCGCA--------------CUGGCUCUA- -5'
12331 5' -57.2 NC_003324.1 + 49118 0.67 0.541219
Target:  5'- aCGCGaucgccaagaUGGCGGGCCGCucGAUUGAGGUg -3'
miRNA:   3'- -GCGC----------AUCGUCUGGCGcaCUGGCUCUA- -5'
12331 5' -57.2 NC_003324.1 + 53488 0.68 0.520257
Target:  5'- aGcCGUAGUAGGCgC-CGUGACCGcGAUg -3'
miRNA:   3'- gC-GCAUCGUCUG-GcGCACUGGCuCUA- -5'
12331 5' -57.2 NC_003324.1 + 33044 0.69 0.415574
Target:  5'- gGCG-AGCAGAUgcagCGCGUGAccuucacgaucacguCCGAGAUg -3'
miRNA:   3'- gCGCaUCGUCUG----GCGCACU---------------GGCUCUA- -5'
12331 5' -57.2 NC_003324.1 + 29325 0.74 0.201862
Target:  5'- gGCGU--CAGGCCGC-UGACCGAGAg -3'
miRNA:   3'- gCGCAucGUCUGGCGcACUGGCUCUa -5'
12331 5' -57.2 NC_003324.1 + 12570 1.06 0.001176
Target:  5'- aCGCGUAGCAGACCGCGUGACCGAGAUc -3'
miRNA:   3'- -GCGCAUCGUCUGGCGCACUGGCUCUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.