miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12332 3' -57.7 NC_003324.1 + 44402 0.66 0.599743
Target:  5'- ----gUGGCUGCAgaGGCUaucggCCGCGc -3'
miRNA:   3'- ucacaACCGACGUggCCGAa----GGCGCu -5'
12332 3' -57.7 NC_003324.1 + 33359 0.66 0.546035
Target:  5'- cGGUGcgUGGUU--GCCGGCU-CCGCGc -3'
miRNA:   3'- -UCACa-ACCGAcgUGGCCGAaGGCGCu -5'
12332 3' -57.7 NC_003324.1 + 30081 0.67 0.535461
Target:  5'- -----cGGCcGCugCGGCUUCCuCGAc -3'
miRNA:   3'- ucacaaCCGaCGugGCCGAAGGcGCU- -5'
12332 3' -57.7 NC_003324.1 + 35315 0.68 0.444268
Target:  5'- --cGgcGGaUUGCGCCGGCUgCUGCGGu -3'
miRNA:   3'- ucaCaaCC-GACGUGGCCGAaGGCGCU- -5'
12332 3' -57.7 NC_003324.1 + 19003 0.69 0.397509
Target:  5'- --cGgcGGCUGCACgCGGCUggccucgaaCGCGAu -3'
miRNA:   3'- ucaCaaCCGACGUG-GCCGAag-------GCGCU- -5'
12332 3' -57.7 NC_003324.1 + 42867 0.69 0.388543
Target:  5'- -----aGGCUGCcgGCCGGC--CCGCGAg -3'
miRNA:   3'- ucacaaCCGACG--UGGCCGaaGGCGCU- -5'
12332 3' -57.7 NC_003324.1 + 14656 0.69 0.379711
Target:  5'- -----cGGCcgcuUGCGCCGGCaggCCGCGAc -3'
miRNA:   3'- ucacaaCCG----ACGUGGCCGaa-GGCGCU- -5'
12332 3' -57.7 NC_003324.1 + 4220 0.71 0.299006
Target:  5'- aGGUGaUGGUguCGCCGGCUUCCGauuCGAg -3'
miRNA:   3'- -UCACaACCGacGUGGCCGAAGGC---GCU- -5'
12332 3' -57.7 NC_003324.1 + 5737 0.75 0.160243
Target:  5'- --cGUUGGCgGCACCGGCUaCCGUu- -3'
miRNA:   3'- ucaCAACCGaCGUGGCCGAaGGCGcu -5'
12332 3' -57.7 NC_003324.1 + 14572 1.08 0.000632
Target:  5'- cAGUGUUGGCUGCACCGGCUUCCGCGAc -3'
miRNA:   3'- -UCACAACCGACGUGGCCGAAGGCGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.