miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12332 5' -60 NC_003324.1 + 14533 1.05 0.000577
Target:  5'- gGUCCGCCGAUGCUUGGACGCCGGCAUg -3'
miRNA:   3'- -CAGGCGGCUACGAACCUGCGGCCGUA- -5'
12332 5' -60 NC_003324.1 + 14906 0.73 0.160434
Target:  5'- aGUCCGCCGAUGCcgcccaGGAagcugccgaUGCCGGCc- -3'
miRNA:   3'- -CAGGCGGCUACGaa----CCU---------GCGGCCGua -5'
12332 5' -60 NC_003324.1 + 23249 0.71 0.214447
Target:  5'- -cUCGCCGAccauaccgUGGGCGCCGGCAa -3'
miRNA:   3'- caGGCGGCUacga----ACCUGCGGCCGUa -5'
12332 5' -60 NC_003324.1 + 14661 0.71 0.231675
Target:  5'- -gCCGCCGGccGCUU--GCGCCGGCAg -3'
miRNA:   3'- caGGCGGCUa-CGAAccUGCGGCCGUa -5'
12332 5' -60 NC_003324.1 + 21660 0.68 0.320033
Target:  5'- --aCGCCGAaGa-UGGGCGCCGGUAc -3'
miRNA:   3'- cagGCGGCUaCgaACCUGCGGCCGUa -5'
12332 5' -60 NC_003324.1 + 29840 0.68 0.360176
Target:  5'- ---aGCCGAUcCUUGGGCGCaucgaGGCGUa -3'
miRNA:   3'- caggCGGCUAcGAACCUGCGg----CCGUA- -5'
12332 5' -60 NC_003324.1 + 34501 0.67 0.403701
Target:  5'- cGUCgGCCGAcaucaccgaUGCcgaGGACGgCGGCGa -3'
miRNA:   3'- -CAGgCGGCU---------ACGaa-CCUGCgGCCGUa -5'
12332 5' -60 NC_003324.1 + 2418 0.67 0.407324
Target:  5'- --aCGCCGAUGaugaagccgccGACGCCGGCGg -3'
miRNA:   3'- cagGCGGCUACgaac-------CUGCGGCCGUa -5'
12332 5' -60 NC_003324.1 + 34434 0.67 0.412797
Target:  5'- uGUCgGCCGAcgGCacaUUGGcaaGCGUCGGCGg -3'
miRNA:   3'- -CAGgCGGCUa-CG---AACC---UGCGGCCGUa -5'
12332 5' -60 NC_003324.1 + 32746 0.73 0.160434
Target:  5'- -cCCGCCGAccgGUUUGGugGCgGGCu- -3'
miRNA:   3'- caGGCGGCUa--CGAACCugCGgCCGua -5'
12332 5' -60 NC_003324.1 + 42300 0.67 0.403701
Target:  5'- aGUgCGCCGccugccacGUGCc-GGGCGCCGGUg- -3'
miRNA:   3'- -CAgGCGGC--------UACGaaCCUGCGGCCGua -5'
12332 5' -60 NC_003324.1 + 47667 0.67 0.394732
Target:  5'- --aCGCCGGUGCgcUGGAcaguucCGUCGGCGc -3'
miRNA:   3'- cagGCGGCUACGa-ACCU------GCGGCCGUa -5'
12332 5' -60 NC_003324.1 + 31012 0.68 0.327786
Target:  5'- cUCuCGUCGAUcGCUUGGuaGCGaCCGGCGc -3'
miRNA:   3'- cAG-GCGGCUA-CGAACC--UGC-GGCCGUa -5'
12332 5' -60 NC_003324.1 + 21960 0.68 0.320033
Target:  5'- cGUCgGCggcgCGAUGCaccUUGGA-GCCGGCAUa -3'
miRNA:   3'- -CAGgCG----GCUACG---AACCUgCGGCCGUA- -5'
12332 5' -60 NC_003324.1 + 52668 0.69 0.312418
Target:  5'- aUCCGCCGcAUGCgcgagcgUGGAUGgucgauCCGGCGc -3'
miRNA:   3'- cAGGCGGC-UACGa------ACCUGC------GGCCGUa -5'
12332 5' -60 NC_003324.1 + 25609 0.7 0.250055
Target:  5'- uGUCgGCCGcUGCU---GCGCCGGCAc -3'
miRNA:   3'- -CAGgCGGCuACGAaccUGCGGCCGUa -5'
12332 5' -60 NC_003324.1 + 19368 0.71 0.225807
Target:  5'- cGUCCGUcagCGAUGgaUcGACGCCGGCGc -3'
miRNA:   3'- -CAGGCG---GCUACgaAcCUGCGGCCGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.