miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12333 3' -56.4 NC_003324.1 + 2492 0.67 0.582307
Target:  5'- --cGGCUUCAUCAUCGGC--GUUgGCg -3'
miRNA:   3'- gaaCCGGAGUAGUGGUCGguCAGgCG- -5'
12333 3' -56.4 NC_003324.1 + 3045 0.67 0.615028
Target:  5'- --gGGCCUguUCGCgGGCgCGGUcucucucaauggCCGCa -3'
miRNA:   3'- gaaCCGGAguAGUGgUCG-GUCA------------GGCG- -5'
12333 3' -56.4 NC_003324.1 + 6009 0.66 0.625976
Target:  5'- ---aGCCgcaAUUGCCGcCCAGUCCGCu -3'
miRNA:   3'- gaacCGGag-UAGUGGUcGGUCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 6396 0.7 0.434638
Target:  5'- --cGGCCagcggaugugauccUCGUCgagaagcuggauACCGGCCAG-CCGCa -3'
miRNA:   3'- gaaCCGG--------------AGUAG------------UGGUCGGUCaGGCG- -5'
12333 3' -56.4 NC_003324.1 + 7733 0.68 0.518176
Target:  5'- --cGGCCgCAUgGCCuGCCuauGUCCGa -3'
miRNA:   3'- gaaCCGGaGUAgUGGuCGGu--CAGGCg -5'
12333 3' -56.4 NC_003324.1 + 11117 0.67 0.613933
Target:  5'- -aUGGCCUg--CGCUauGGCCcgaccuuGGUCCGCu -3'
miRNA:   3'- gaACCGGAguaGUGG--UCGG-------UCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 11218 0.67 0.604094
Target:  5'- -aUGGCCUaCAUCGCCGGaaauggagaUCAG-CCGg -3'
miRNA:   3'- gaACCGGA-GUAGUGGUC---------GGUCaGGCg -5'
12333 3' -56.4 NC_003324.1 + 14568 0.68 0.528693
Target:  5'- gUUGGCUg---CACCGGCU--UCCGCg -3'
miRNA:   3'- gAACCGGaguaGUGGUCGGucAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 16114 1.11 0.000542
Target:  5'- aCUUGGCCUCAUCACCAGCCAGUCCGCc -3'
miRNA:   3'- -GAACCGGAGUAGUGGUCGGUCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 18100 0.67 0.615028
Target:  5'- -aUGGCC-CGUggCGCCGGCCAaUCgGUa -3'
miRNA:   3'- gaACCGGaGUA--GUGGUCGGUcAGgCG- -5'
12333 3' -56.4 NC_003324.1 + 19434 0.68 0.549954
Target:  5'- cCUUGGCCUUGUCcuuACCGGCaaagCCGa -3'
miRNA:   3'- -GAACCGGAGUAG---UGGUCGgucaGGCg -5'
12333 3' -56.4 NC_003324.1 + 20892 0.66 0.63693
Target:  5'- --cGGCgaugcgCGUCACCAaCaCGGUCCGCc -3'
miRNA:   3'- gaaCCGga----GUAGUGGUcG-GUCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 21379 0.7 0.427948
Target:  5'- cCUUaGCCUCgAUCGUCuGCCAcGUCCGCg -3'
miRNA:   3'- -GAAcCGGAG-UAGUGGuCGGU-CAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 21438 0.71 0.373211
Target:  5'- --aGGCC-CGguUCAuCCAGCaGGUCCGCa -3'
miRNA:   3'- gaaCCGGaGU--AGU-GGUCGgUCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 28626 0.66 0.658814
Target:  5'- -gUGGCCcggaUCGUUGCgGGCCGccuuGUCgCGCg -3'
miRNA:   3'- gaACCGG----AGUAGUGgUCGGU----CAG-GCG- -5'
12333 3' -56.4 NC_003324.1 + 29581 0.67 0.615028
Target:  5'- --aGGCCUCGUCGCUcgauuccucgGGCagaacGUCCuGCa -3'
miRNA:   3'- gaaCCGGAGUAGUGG----------UCGgu---CAGG-CG- -5'
12333 3' -56.4 NC_003324.1 + 29739 0.69 0.477008
Target:  5'- -aUGGCCUCAUCGCCuucguacGCCucgaUGCg -3'
miRNA:   3'- gaACCGGAGUAGUGGu------CGGucagGCG- -5'
12333 3' -56.4 NC_003324.1 + 30341 0.7 0.437523
Target:  5'- cCUUGGCCcgCAUCAUC-GCCGaugguGUCgGCg -3'
miRNA:   3'- -GAACCGGa-GUAGUGGuCGGU-----CAGgCG- -5'
12333 3' -56.4 NC_003324.1 + 31076 0.68 0.518176
Target:  5'- --cGGCCUgAUUGuCCGuGCCGGUCCuuGCg -3'
miRNA:   3'- gaaCCGGAgUAGU-GGU-CGGUCAGG--CG- -5'
12333 3' -56.4 NC_003324.1 + 31251 0.67 0.615028
Target:  5'- --gGGCCUgAUgGCgcaGGCCGGgcagcUCCGCg -3'
miRNA:   3'- gaaCCGGAgUAgUGg--UCGGUC-----AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.