miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12333 3' -56.4 NC_003324.1 + 31076 0.68 0.518176
Target:  5'- --cGGCCUgAUUGuCCGuGCCGGUCCuuGCg -3'
miRNA:   3'- gaaCCGGAgUAGU-GGU-CGGUCAGG--CG- -5'
12333 3' -56.4 NC_003324.1 + 32367 0.68 0.518176
Target:  5'- --aGGCCgUUGUCGCCAGCguGUUCu- -3'
miRNA:   3'- gaaCCGG-AGUAGUGGUCGguCAGGcg -5'
12333 3' -56.4 NC_003324.1 + 7733 0.68 0.518176
Target:  5'- --cGGCCgCAUgGCCuGCCuauGUCCGa -3'
miRNA:   3'- gaaCCGGaGUAgUGGuCGGu--CAGGCg -5'
12333 3' -56.4 NC_003324.1 + 29739 0.69 0.477008
Target:  5'- -aUGGCCUCAUCGCCuucguacGCCucgaUGCg -3'
miRNA:   3'- gaACCGGAGUAGUGGu------CGGucagGCG- -5'
12333 3' -56.4 NC_003324.1 + 54297 0.69 0.477008
Target:  5'- --aGGCCUgCGUCugC-GCC-GUCUGCa -3'
miRNA:   3'- gaaCCGGA-GUAGugGuCGGuCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 43548 0.69 0.457037
Target:  5'- --aGGCUUCcagCAUCAGCCAcacgCCGCg -3'
miRNA:   3'- gaaCCGGAGua-GUGGUCGGUca--GGCG- -5'
12333 3' -56.4 NC_003324.1 + 52237 0.69 0.447221
Target:  5'- --gGGCU--AUCACuCGGCCAGUUCGUc -3'
miRNA:   3'- gaaCCGGagUAGUG-GUCGGUCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 30341 0.7 0.437523
Target:  5'- cCUUGGCCcgCAUCAUC-GCCGaugguGUCgGCg -3'
miRNA:   3'- -GAACCGGa-GUAGUGGuCGGU-----CAGgCG- -5'
12333 3' -56.4 NC_003324.1 + 6396 0.7 0.434638
Target:  5'- --cGGCCagcggaugugauccUCGUCgagaagcuggauACCGGCCAG-CCGCa -3'
miRNA:   3'- gaaCCGG--------------AGUAG------------UGGUCGGUCaGGCG- -5'
12333 3' -56.4 NC_003324.1 + 21379 0.7 0.427948
Target:  5'- cCUUaGCCUCgAUCGUCuGCCAcGUCCGCg -3'
miRNA:   3'- -GAAcCGGAG-UAGUGGuCGGU-CAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 43096 0.7 0.406403
Target:  5'- --aGGCCcCAcUACCGGCCGGUucuccguugccgacCCGCg -3'
miRNA:   3'- gaaCCGGaGUaGUGGUCGGUCA--------------GGCG- -5'
12333 3' -56.4 NC_003324.1 + 32128 0.71 0.373211
Target:  5'- cCUUGGUCUC--CGCCucgGGCCGGgCCGCc -3'
miRNA:   3'- -GAACCGGAGuaGUGG---UCGGUCaGGCG- -5'
12333 3' -56.4 NC_003324.1 + 21438 0.71 0.373211
Target:  5'- --aGGCC-CGguUCAuCCAGCaGGUCCGCa -3'
miRNA:   3'- gaaCCGGaGU--AGU-GGUCGgUCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 43034 0.73 0.26501
Target:  5'- --gGGCCUgCAUUGCCGGUaaCGGUUCGCg -3'
miRNA:   3'- gaaCCGGA-GUAGUGGUCG--GUCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 16114 1.11 0.000542
Target:  5'- aCUUGGCCUCAUCACCAGCCAGUCCGCc -3'
miRNA:   3'- -GAACCGGAGUAGUGGUCGGUCAGGCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.