miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12333 5' -55.7 NC_003324.1 + 16077 1.1 0.000634
Target:  5'- uUUGCGAAGGCUGGUGAUGGCAUCGCCg -3'
miRNA:   3'- -AACGCUUCCGACCACUACCGUAGCGG- -5'
12333 5' -55.7 NC_003324.1 + 44904 0.74 0.242005
Target:  5'- -cGCGggGGCUGGauugcucGAUGGCAagcugCGCg -3'
miRNA:   3'- aaCGCuuCCGACCa------CUACCGUa----GCGg -5'
12333 5' -55.7 NC_003324.1 + 20799 0.73 0.275534
Target:  5'- -gGCGAGGcggcggaccguGUUGGUGAcGcGCAUCGCCg -3'
miRNA:   3'- aaCGCUUC-----------CGACCACUaC-CGUAGCGG- -5'
12333 5' -55.7 NC_003324.1 + 54197 0.71 0.353494
Target:  5'- -gGCGccaacuuuucGAGGUUGGUGAUGcGCuUCGUCa -3'
miRNA:   3'- aaCGC----------UUCCGACCACUAC-CGuAGCGG- -5'
12333 5' -55.7 NC_003324.1 + 31318 0.71 0.370843
Target:  5'- gUGCGGccggcggcgcuGGcGCUGGcGggGGCAUCGUCa -3'
miRNA:   3'- aACGCU-----------UC-CGACCaCuaCCGUAGCGG- -5'
12333 5' -55.7 NC_003324.1 + 27030 0.7 0.435973
Target:  5'- -gGCGcAGGCuaaugaUGGUGGUGGUguaAUCGCg -3'
miRNA:   3'- aaCGCuUCCG------ACCACUACCG---UAGCGg -5'
12333 5' -55.7 NC_003324.1 + 49706 0.69 0.476024
Target:  5'- gUUGCGAucGUUGGcgccugccagaaUGAcGGUAUCGCCa -3'
miRNA:   3'- -AACGCUucCGACC------------ACUaCCGUAGCGG- -5'
12333 5' -55.7 NC_003324.1 + 30114 0.69 0.486322
Target:  5'- -gGCGgcGGCaugGGUGGUGuugguggcgcaGCAUCGCg -3'
miRNA:   3'- aaCGCuuCCGa--CCACUAC-----------CGUAGCGg -5'
12333 5' -55.7 NC_003324.1 + 4227 0.68 0.507225
Target:  5'- ---aGAucGUaGGUGAUGGUGUCGCCg -3'
miRNA:   3'- aacgCUucCGaCCACUACCGUAGCGG- -5'
12333 5' -55.7 NC_003324.1 + 38973 0.68 0.522082
Target:  5'- cUUGCcGAGGCUGGUaaGA-GGCugaaccgccugcaguAUCGCCu -3'
miRNA:   3'- -AACGcUUCCGACCA--CUaCCG---------------UAGCGG- -5'
12333 5' -55.7 NC_003324.1 + 56637 0.68 0.539264
Target:  5'- -gGCGgcGGCaugGGUcGcgGGCAacuUCGCCc -3'
miRNA:   3'- aaCGCuuCCGa--CCA-CuaCCGU---AGCGG- -5'
12333 5' -55.7 NC_003324.1 + 39655 0.68 0.550099
Target:  5'- --cCGGAGGCUGGUGcUGaCGUggCGCCa -3'
miRNA:   3'- aacGCUUCCGACCACuACcGUA--GCGG- -5'
12333 5' -55.7 NC_003324.1 + 3647 0.68 0.550099
Target:  5'- -gGCGggGGCcucguugagGGUGAUugaaGGCAg-GCCg -3'
miRNA:   3'- aaCGCuuCCGa--------CCACUA----CCGUagCGG- -5'
12333 5' -55.7 NC_003324.1 + 16030 0.68 0.556633
Target:  5'- -gGCGGAcuGGCUGGUGAUgaGGCcaaguucgacgacUUGCCg -3'
miRNA:   3'- aaCGCUU--CCGACCACUA--CCGu------------AGCGG- -5'
12333 5' -55.7 NC_003324.1 + 16127 0.68 0.561001
Target:  5'- cUGCGcAGGGCgcuucGGUagcGggGGCcgCGCCa -3'
miRNA:   3'- aACGC-UUCCGa----CCA---CuaCCGuaGCGG- -5'
12333 5' -55.7 NC_003324.1 + 22486 0.68 0.561001
Target:  5'- -gGCGAAGGUguucggcgaggUGGUGAcggauUGGgagcuGUCGCCg -3'
miRNA:   3'- aaCGCUUCCG-----------ACCACU-----ACCg----UAGCGG- -5'
12333 5' -55.7 NC_003324.1 + 48829 0.67 0.582972
Target:  5'- --aUGggGGCgacgaGGUGAUGuccuuCAUCGCCa -3'
miRNA:   3'- aacGCuuCCGa----CCACUACc----GUAGCGG- -5'
12333 5' -55.7 NC_003324.1 + 32541 0.67 0.582972
Target:  5'- -gGCGAAGGCgacgaGG-GcAUGGCugccGUUGCCa -3'
miRNA:   3'- aaCGCUUCCGa----CCaC-UACCG----UAGCGG- -5'
12333 5' -55.7 NC_003324.1 + 43266 0.67 0.592917
Target:  5'- gUGCGccuugccuucgucGAGGCUGGcucgGAuUGGCGcUCGCUc -3'
miRNA:   3'- aACGC-------------UUCCGACCa---CU-ACCGU-AGCGG- -5'
12333 5' -55.7 NC_003324.1 + 24295 0.67 0.594024
Target:  5'- -gGCGGAGcUUGGcGAaGGCGUCGCg -3'
miRNA:   3'- aaCGCUUCcGACCaCUaCCGUAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.