Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12333 | 5' | -55.7 | NC_003324.1 | + | 233 | 0.66 | 0.660697 |
Target: 5'- --uCGAcuuuaGGGCUGGcGGccGCAUCGCCg -3' miRNA: 3'- aacGCU-----UCCGACCaCUacCGUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 3647 | 0.68 | 0.550099 |
Target: 5'- -gGCGggGGCcucguugagGGUGAUugaaGGCAg-GCCg -3' miRNA: 3'- aaCGCuuCCGa--------CCACUA----CCGUagCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 4227 | 0.68 | 0.507225 |
Target: 5'- ---aGAucGUaGGUGAUGGUGUCGCCg -3' miRNA: 3'- aacgCUucCGaCCACUACCGUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 10821 | 0.66 | 0.657367 |
Target: 5'- -gGUGAugacaacGGcGCUGGUGGUGGCugcacgagugaCGCCc -3' miRNA: 3'- aaCGCU-------UC-CGACCACUACCGua---------GCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 15451 | 0.66 | 0.627342 |
Target: 5'- -cGCGAAGGUUGccaggGGCGagGCCa -3' miRNA: 3'- aaCGCUUCCGACcacuaCCGUagCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 16030 | 0.68 | 0.556633 |
Target: 5'- -gGCGGAcuGGCUGGUGAUgaGGCcaaguucgacgacUUGCCg -3' miRNA: 3'- aaCGCUU--CCGACCACUA--CCGu------------AGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 16077 | 1.1 | 0.000634 |
Target: 5'- uUUGCGAAGGCUGGUGAUGGCAUCGCCg -3' miRNA: 3'- -AACGCUUCCGACCACUACCGUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 16127 | 0.68 | 0.561001 |
Target: 5'- cUGCGcAGGGCgcuucGGUagcGggGGCcgCGCCa -3' miRNA: 3'- aACGC-UUCCGa----CCA---CuaCCGuaGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 20582 | 0.67 | 0.616219 |
Target: 5'- -gGCGAgcGGGauccGGUGcuGUGGCgccGUCGCCa -3' miRNA: 3'- aaCGCU--UCCga--CCAC--UACCG---UAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 20799 | 0.73 | 0.275534 |
Target: 5'- -gGCGAGGcggcggaccguGUUGGUGAcGcGCAUCGCCg -3' miRNA: 3'- aaCGCUUC-----------CGACCACUaC-CGUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 22486 | 0.68 | 0.561001 |
Target: 5'- -gGCGAAGGUguucggcgaggUGGUGAcggauUGGgagcuGUCGCCg -3' miRNA: 3'- aaCGCUUCCG-----------ACCACU-----ACCg----UAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 24295 | 0.67 | 0.594024 |
Target: 5'- -gGCGGAGcUUGGcGAaGGCGUCGCg -3' miRNA: 3'- aaCGCUUCcGACCaCUaCCGUAGCGg -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 24377 | 0.67 | 0.601781 |
Target: 5'- cUGCGAuacGGGCUGGccgagaUGGUcgGGCAUgcggauaugcacugCGCCg -3' miRNA: 3'- aACGCU---UCCGACC------ACUA--CCGUA--------------GCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 26811 | 0.66 | 0.682815 |
Target: 5'- gUGCGcuuGGCUGGcuuUGGCGcCGCUc -3' miRNA: 3'- aACGCuu-CCGACCacuACCGUaGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 27030 | 0.7 | 0.435973 |
Target: 5'- -gGCGcAGGCuaaugaUGGUGGUGGUguaAUCGCg -3' miRNA: 3'- aaCGCuUCCG------ACCACUACCG---UAGCGg -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 30114 | 0.69 | 0.486322 |
Target: 5'- -gGCGgcGGCaugGGUGGUGuugguggcgcaGCAUCGCg -3' miRNA: 3'- aaCGCuuCCGa--CCACUAC-----------CGUAGCGg -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 30325 | 0.66 | 0.649591 |
Target: 5'- -cGcCGAuGGUgucGGcGGUGGCGUCGCUc -3' miRNA: 3'- aaC-GCUuCCGa--CCaCUACCGUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 30340 | 0.66 | 0.624004 |
Target: 5'- cUGCGAu-GCUGcauccuccgucagaGccuUGAUGGCGUCGCCc -3' miRNA: 3'- aACGCUucCGAC--------------C---ACUACCGUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 31318 | 0.71 | 0.370843 |
Target: 5'- gUGCGGccggcggcgcuGGcGCUGGcGggGGCAUCGUCa -3' miRNA: 3'- aACGCU-----------UC-CGACCaCuaCCGUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 32541 | 0.67 | 0.582972 |
Target: 5'- -gGCGAAGGCgacgaGG-GcAUGGCugccGUUGCCa -3' miRNA: 3'- aaCGCUUCCGa----CCaC-UACCG----UAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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