Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12333 | 5' | -55.7 | NC_003324.1 | + | 4227 | 0.68 | 0.507225 |
Target: 5'- ---aGAucGUaGGUGAUGGUGUCGCCg -3' miRNA: 3'- aacgCUucCGaCCACUACCGUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 30114 | 0.69 | 0.486322 |
Target: 5'- -gGCGgcGGCaugGGUGGUGuugguggcgcaGCAUCGCg -3' miRNA: 3'- aaCGCuuCCGa--CCACUAC-----------CGUAGCGg -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 49706 | 0.69 | 0.476024 |
Target: 5'- gUUGCGAucGUUGGcgccugccagaaUGAcGGUAUCGCCa -3' miRNA: 3'- -AACGCUucCGACC------------ACUaCCGUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 27030 | 0.7 | 0.435973 |
Target: 5'- -gGCGcAGGCuaaugaUGGUGGUGGUguaAUCGCg -3' miRNA: 3'- aaCGCuUCCG------ACCACUACCG---UAGCGg -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 31318 | 0.71 | 0.370843 |
Target: 5'- gUGCGGccggcggcgcuGGcGCUGGcGggGGCAUCGUCa -3' miRNA: 3'- aACGCU-----------UC-CGACCaCuaCCGUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 54197 | 0.71 | 0.353494 |
Target: 5'- -gGCGccaacuuuucGAGGUUGGUGAUGcGCuUCGUCa -3' miRNA: 3'- aaCGC----------UUCCGACCACUAC-CGuAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 20799 | 0.73 | 0.275534 |
Target: 5'- -gGCGAGGcggcggaccguGUUGGUGAcGcGCAUCGCCg -3' miRNA: 3'- aaCGCUUC-----------CGACCACUaC-CGUAGCGG- -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 44904 | 0.74 | 0.242005 |
Target: 5'- -cGCGggGGCUGGauugcucGAUGGCAagcugCGCg -3' miRNA: 3'- aaCGCuuCCGACCa------CUACCGUa----GCGg -5' |
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12333 | 5' | -55.7 | NC_003324.1 | + | 16077 | 1.1 | 0.000634 |
Target: 5'- uUUGCGAAGGCUGGUGAUGGCAUCGCCg -3' miRNA: 3'- -AACGCUUCCGACCACUACCGUAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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