miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12334 3' -53.1 NC_003324.1 + 56657 0.66 0.81
Target:  5'- uCAGCGAUaGCGGCGuuauGGGCGgcG-GCAu -3'
miRNA:   3'- -GUCGUUGaUGCCGC----UCUGCuaCuCGU- -5'
12334 3' -53.1 NC_003324.1 + 54550 0.67 0.774196
Target:  5'- aAGCAAUgg-GGCGAGugGAagcccgucucugaaaUGGGCGc -3'
miRNA:   3'- gUCGUUGaugCCGCUCugCU---------------ACUCGU- -5'
12334 3' -53.1 NC_003324.1 + 53896 0.66 0.828841
Target:  5'- -cGCAGCc-CGGCGAGACcuuGGUGcAGCc -3'
miRNA:   3'- guCGUUGauGCCGCUCUG---CUAC-UCGu -5'
12334 3' -53.1 NC_003324.1 + 50862 0.69 0.661659
Target:  5'- cCAGCGACagcAUGGCGAGGUGGUGAcCAu -3'
miRNA:   3'- -GUCGUUGa--UGCCGCUCUGCUACUcGU- -5'
12334 3' -53.1 NC_003324.1 + 49517 0.69 0.669478
Target:  5'- uGGC-ACUcucggccguaucgaGCGGCGAGGCGAcGuGCAu -3'
miRNA:   3'- gUCGuUGA--------------UGCCGCUCUGCUaCuCGU- -5'
12334 3' -53.1 NC_003324.1 + 49349 0.66 0.837944
Target:  5'- gCGGCGccaACaGCGGUGucGACGAucUGGGCGa -3'
miRNA:   3'- -GUCGU---UGaUGCCGCu-CUGCU--ACUCGU- -5'
12334 3' -53.1 NC_003324.1 + 45826 0.72 0.496377
Target:  5'- gAGgGGCUGCGGCGAGAacaGUGAGg- -3'
miRNA:   3'- gUCgUUGAUGCCGCUCUgc-UACUCgu -5'
12334 3' -53.1 NC_003324.1 + 45686 0.8 0.159647
Target:  5'- gCAGgGGCU-CGGCGAGGCG-UGAGCAg -3'
miRNA:   3'- -GUCgUUGAuGCCGCUCUGCuACUCGU- -5'
12334 3' -53.1 NC_003324.1 + 45352 0.71 0.528403
Target:  5'- gGGCGACUugaagcagGCGGCGAGcaGCGA-GGGCc -3'
miRNA:   3'- gUCGUUGA--------UGCCGCUC--UGCUaCUCGu -5'
12334 3' -53.1 NC_003324.1 + 44582 0.67 0.742827
Target:  5'- gCAGCGACacgGCGGCGAGGaacugcccguugcaGAUGuGUg -3'
miRNA:   3'- -GUCGUUGa--UGCCGCUCUg-------------CUACuCGu -5'
12334 3' -53.1 NC_003324.1 + 42690 0.66 0.823275
Target:  5'- cCGGCAACcGCuGGCGAggcaucaucccaucgGACGAUGcGGUAg -3'
miRNA:   3'- -GUCGUUGaUG-CCGCU---------------CUGCUAC-UCGU- -5'
12334 3' -53.1 NC_003324.1 + 40126 0.72 0.475519
Target:  5'- -cGCAACUACGGUG-GACGGccgacGAGCu -3'
miRNA:   3'- guCGUUGAUGCCGCuCUGCUa----CUCGu -5'
12334 3' -53.1 NC_003324.1 + 38292 0.66 0.819523
Target:  5'- uCGGCAACUACGuGUucGACGAgGAGa- -3'
miRNA:   3'- -GUCGUUGAUGC-CGcuCUGCUaCUCgu -5'
12334 3' -53.1 NC_003324.1 + 37106 0.66 0.81
Target:  5'- aAGaCGGCUAUcagGGCGAuGACGA-GGGCGa -3'
miRNA:   3'- gUC-GUUGAUG---CCGCU-CUGCUaCUCGU- -5'
12334 3' -53.1 NC_003324.1 + 36248 0.7 0.594454
Target:  5'- gCAGCAGgUcgGCGGCGuGACgGAUGAGa- -3'
miRNA:   3'- -GUCGUUgA--UGCCGCuCUG-CUACUCgu -5'
12334 3' -53.1 NC_003324.1 + 35034 0.7 0.567786
Target:  5'- gGGCGAUgccgaugaucaggGCGGCGcAGAUGAaGAGCAg -3'
miRNA:   3'- gUCGUUGa------------UGCCGC-UCUGCUaCUCGU- -5'
12334 3' -53.1 NC_003324.1 + 34618 0.7 0.594454
Target:  5'- -cGCAGCUcCGG-GAGGCGcUGGGCGa -3'
miRNA:   3'- guCGUUGAuGCCgCUCUGCuACUCGU- -5'
12334 3' -53.1 NC_003324.1 + 33432 0.68 0.72781
Target:  5'- cCGGCAACcACGcacCGGGACGAUGAcCAu -3'
miRNA:   3'- -GUCGUUGaUGCc--GCUCUGCUACUcGU- -5'
12334 3' -53.1 NC_003324.1 + 33058 0.66 0.819523
Target:  5'- uCGGCAuugGCgACGGCGAG-CaGAUGcAGCGc -3'
miRNA:   3'- -GUCGU---UGaUGCCGCUCuG-CUAC-UCGU- -5'
12334 3' -53.1 NC_003324.1 + 32493 0.67 0.770085
Target:  5'- uCGGCGAUcACGGUGucGACGAUGucGCu -3'
miRNA:   3'- -GUCGUUGaUGCCGCu-CUGCUACu-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.