miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12334 5' -58.4 NC_003324.1 + 6254 0.66 0.521272
Target:  5'- -gCugCCUCUCGCaugucguCGGGCAgCGCAuucCAGg -3'
miRNA:   3'- gaGugGGAGAGCG-------GCUCGU-GCGU---GUC- -5'
12334 5' -58.4 NC_003324.1 + 13485 0.66 0.574822
Target:  5'- gUCGCCUguaUCUgGCCGAGC-UGCAgCAa -3'
miRNA:   3'- gAGUGGG---AGAgCGGCUCGuGCGU-GUc -5'
12334 5' -58.4 NC_003324.1 + 16615 1.09 0.000504
Target:  5'- cCUCACCCUCUCGCCGAGCACGCACAGg -3'
miRNA:   3'- -GAGUGGGAGAGCGGCUCGUGCGUGUC- -5'
12334 5' -58.4 NC_003324.1 + 24069 0.74 0.174812
Target:  5'- uUUACCUUCUCGCCGGuGCGCuGCGCc- -3'
miRNA:   3'- gAGUGGGAGAGCGGCU-CGUG-CGUGuc -5'
12334 5' -58.4 NC_003324.1 + 24272 0.66 0.55363
Target:  5'- --gGCCUUCUCGUCGAuCugGgCACGGc -3'
miRNA:   3'- gagUGGGAGAGCGGCUcGugC-GUGUC- -5'
12334 5' -58.4 NC_003324.1 + 29257 0.66 0.522305
Target:  5'- --gGCCUgcaUCGCCGGGCuCGCGCu- -3'
miRNA:   3'- gagUGGGag-AGCGGCUCGuGCGUGuc -5'
12334 5' -58.4 NC_003324.1 + 35599 0.66 0.55363
Target:  5'- gCUU-CCUUCUUGCCGAugucggcuucuGCuGCGCGCAGc -3'
miRNA:   3'- -GAGuGGGAGAGCGGCU-----------CG-UGCGUGUC- -5'
12334 5' -58.4 NC_003324.1 + 39427 0.66 0.55363
Target:  5'- gUCACCgUUCUUGUCGAGgAUGUaguACAGg -3'
miRNA:   3'- gAGUGG-GAGAGCGGCUCgUGCG---UGUC- -5'
12334 5' -58.4 NC_003324.1 + 40071 0.66 0.55363
Target:  5'- -aCACCCUCgccaCGCUcGGCGCG-ACGGa -3'
miRNA:   3'- gaGUGGGAGa---GCGGcUCGUGCgUGUC- -5'
12334 5' -58.4 NC_003324.1 + 41643 0.69 0.405432
Target:  5'- gCUCGCCCgcUCUCGUCGgcGGCgcgacguagccgACGCGCAc -3'
miRNA:   3'- -GAGUGGG--AGAGCGGC--UCG------------UGCGUGUc -5'
12334 5' -58.4 NC_003324.1 + 45765 0.67 0.491689
Target:  5'- gCUCACgC-CUCGCCGAGCcccUGCAUc- -3'
miRNA:   3'- -GAGUGgGaGAGCGGCUCGu--GCGUGuc -5'
12334 5' -58.4 NC_003324.1 + 49439 0.66 0.526444
Target:  5'- gUCGCCCgaucgUCgacaccgcuguuggCGCCGcacAGCACGUGCAGa -3'
miRNA:   3'- gAGUGGG-----AGa-------------GCGGC---UCGUGCGUGUC- -5'
12334 5' -58.4 NC_003324.1 + 50367 0.66 0.5642
Target:  5'- -aCGCCUUCUUGCCGucgaccGGCG-GCGCAu -3'
miRNA:   3'- gaGUGGGAGAGCGGC------UCGUgCGUGUc -5'
12334 5' -58.4 NC_003324.1 + 53817 0.66 0.574822
Target:  5'- -gCACCaaggUCUCGCCGGGC-UGCgACAa -3'
miRNA:   3'- gaGUGGg---AGAGCGGCUCGuGCG-UGUc -5'
12334 5' -58.4 NC_003324.1 + 57304 0.68 0.433145
Target:  5'- -cCGCCCUCgccucCGCCGAGCccuccaGCAguGa -3'
miRNA:   3'- gaGUGGGAGa----GCGGCUCGug----CGUguC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.