miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12335 5' -54.5 NC_003324.1 + 2506 0.66 0.753524
Target:  5'- gCCGCCGgCgucgGCGGcuucaucAUCGGCGUugGc -3'
miRNA:   3'- -GGCGGUgGaa--CGUU-------UAGCCGCGugUa -5'
12335 5' -54.5 NC_003324.1 + 4536 0.67 0.672367
Target:  5'- aCGCCACCgacaagaugagccGCGccguGAUCGaGCGCGCGc -3'
miRNA:   3'- gGCGGUGGaa-----------CGU----UUAGC-CGCGUGUa -5'
12335 5' -54.5 NC_003324.1 + 5531 0.69 0.577915
Target:  5'- gCCGCCuGCCUacccagcgucgaUGCGGAgaagaacUCGGCGcCGCAg -3'
miRNA:   3'- -GGCGG-UGGA------------ACGUUU-------AGCCGC-GUGUa -5'
12335 5' -54.5 NC_003324.1 + 7266 0.71 0.472209
Target:  5'- aCGCCAUCgaGC---UCGGCGCGCu- -3'
miRNA:   3'- gGCGGUGGaaCGuuuAGCCGCGUGua -5'
12335 5' -54.5 NC_003324.1 + 7413 0.67 0.700997
Target:  5'- aUCGUCAgCgUGCcc-UCGGCGCGCGg -3'
miRNA:   3'- -GGCGGUgGaACGuuuAGCCGCGUGUa -5'
12335 5' -54.5 NC_003324.1 + 8427 0.68 0.611168
Target:  5'- uCCGCCGgC-UGCAGGUgcaggcggauuugCGGCGCAUg- -3'
miRNA:   3'- -GGCGGUgGaACGUUUA-------------GCCGCGUGua -5'
12335 5' -54.5 NC_003324.1 + 9734 0.67 0.700997
Target:  5'- aCGCCGCCcaGCGcGUUGGCGUugccgGCGg -3'
miRNA:   3'- gGCGGUGGaaCGUuUAGCCGCG-----UGUa -5'
12335 5' -54.5 NC_003324.1 + 10183 0.66 0.744063
Target:  5'- cCCGUCAgCUucggcuagUGCucAUCGGCGC-CAa -3'
miRNA:   3'- -GGCGGUgGA--------ACGuuUAGCCGCGuGUa -5'
12335 5' -54.5 NC_003324.1 + 13084 0.69 0.534254
Target:  5'- aUGCCGCCcUGCAGAUCGccagccgcgaacaGCGCAgCGUu -3'
miRNA:   3'- gGCGGUGGaACGUUUAGC-------------CGCGU-GUA- -5'
12335 5' -54.5 NC_003324.1 + 14060 0.66 0.754569
Target:  5'- gCGCCAUCgcccgauccGCAGAUCGGCaaagcaGCGCu- -3'
miRNA:   3'- gGCGGUGGaa-------CGUUUAGCCG------CGUGua -5'
12335 5' -54.5 NC_003324.1 + 16980 1.07 0.001539
Target:  5'- gCCGCCACCUUGCAAAUCGGCGCACAUc -3'
miRNA:   3'- -GGCGGUGGAACGUUUAGCCGCGUGUA- -5'
12335 5' -54.5 NC_003324.1 + 20868 0.66 0.74828
Target:  5'- uCCGCCGCCUcGCcaacguuccggCGGUGgACAa -3'
miRNA:   3'- -GGCGGUGGAaCGuuua-------GCCGCgUGUa -5'
12335 5' -54.5 NC_003324.1 + 21073 0.66 0.762882
Target:  5'- aCGCUGCCUUGUcggccgccgCGGCGCGu-- -3'
miRNA:   3'- gGCGGUGGAACGuuua-----GCCGCGUgua -5'
12335 5' -54.5 NC_003324.1 + 23215 0.66 0.73344
Target:  5'- uUGCCGCCaUUGCA--UCGGCGauggaaaagcgaCGCAUc -3'
miRNA:   3'- gGCGGUGG-AACGUuuAGCCGC------------GUGUA- -5'
12335 5' -54.5 NC_003324.1 + 23617 0.66 0.764947
Target:  5'- cCCGCCGCCacGCug--UGGgGCACc- -3'
miRNA:   3'- -GGCGGUGGaaCGuuuaGCCgCGUGua -5'
12335 5' -54.5 NC_003324.1 + 24072 0.67 0.656829
Target:  5'- aCCGCCGCCcuaccaGCGcGUCGaGCGCGa-- -3'
miRNA:   3'- -GGCGGUGGaa----CGUuUAGC-CGCGUgua -5'
12335 5' -54.5 NC_003324.1 + 24546 0.66 0.743005
Target:  5'- aCUGUCACCcuccccgagaaugUccaggacgUGCAGGUCGGCGCAa-- -3'
miRNA:   3'- -GGCGGUGG-------------A--------ACGUUUAGCCGCGUgua -5'
12335 5' -54.5 NC_003324.1 + 25331 0.66 0.723791
Target:  5'- cCCGUCGCCUUGgcuuuaagggcggcCAggugcucgaaccgucAGUCGGCGCAgGc -3'
miRNA:   3'- -GGCGGUGGAAC--------------GU---------------UUAGCCGCGUgUa -5'
12335 5' -54.5 NC_003324.1 + 27300 0.68 0.598942
Target:  5'- cCCGCC-CCUUGCcuucgcgugCGGCGaCAUAa -3'
miRNA:   3'- -GGCGGuGGAACGuuua-----GCCGC-GUGUa -5'
12335 5' -54.5 NC_003324.1 + 29471 0.7 0.503341
Target:  5'- aCgGCCGCCUggcUGCGGgcgcGUCGG-GCGCAUc -3'
miRNA:   3'- -GgCGGUGGA---ACGUU----UAGCCgCGUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.