miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12335 5' -54.5 NC_003324.1 + 44325 0.67 0.690029
Target:  5'- gCCGauaGCCUcUGCAGccaCGGCGCGCGc -3'
miRNA:   3'- -GGCgg-UGGA-ACGUUua-GCCGCGUGUa -5'
12335 5' -54.5 NC_003324.1 + 49881 0.67 0.679004
Target:  5'- -aGCCGgCggGCAAagaucgcugcGUCGGCGCGCu- -3'
miRNA:   3'- ggCGGUgGaaCGUU----------UAGCCGCGUGua -5'
12335 5' -54.5 NC_003324.1 + 4536 0.67 0.672367
Target:  5'- aCGCCACCgacaagaugagccGCGccguGAUCGaGCGCGCGc -3'
miRNA:   3'- gGCGGUGGaa-----------CGU----UUAGC-CGCGUGUa -5'
12335 5' -54.5 NC_003324.1 + 24072 0.67 0.656829
Target:  5'- aCCGCCGCCcuaccaGCGcGUCGaGCGCGa-- -3'
miRNA:   3'- -GGCGGUGGaa----CGUuUAGC-CGCGUgua -5'
12335 5' -54.5 NC_003324.1 + 35635 0.68 0.6457
Target:  5'- gCGCagGCCUUGCAGAUCcGCuCGCAg -3'
miRNA:   3'- gGCGg-UGGAACGUUUAGcCGcGUGUa -5'
12335 5' -54.5 NC_003324.1 + 8427 0.68 0.611168
Target:  5'- uCCGCCGgC-UGCAGGUgcaggcggauuugCGGCGCAUg- -3'
miRNA:   3'- -GGCGGUgGaACGUUUA-------------GCCGCGUGua -5'
12335 5' -54.5 NC_003324.1 + 27300 0.68 0.598942
Target:  5'- cCCGCC-CCUUGCcuucgcgugCGGCGaCAUAa -3'
miRNA:   3'- -GGCGGuGGAACGuuua-----GCCGC-GUGUa -5'
12335 5' -54.5 NC_003324.1 + 31340 0.68 0.594505
Target:  5'- gUCGCCGCCgcaaaaacgcgcagUGCGGccggCGGCGCugGc -3'
miRNA:   3'- -GGCGGUGGa-------------ACGUUua--GCCGCGugUa -5'
12335 5' -54.5 NC_003324.1 + 34411 0.68 0.590072
Target:  5'- gCCGCCGuCCUcgGCAucggugauGUCGGCcgacgGCACAUu -3'
miRNA:   3'- -GGCGGU-GGAa-CGUu-------UAGCCG-----CGUGUA- -5'
12335 5' -54.5 NC_003324.1 + 42381 0.68 0.590072
Target:  5'- cCCGgCACgUgGCAGG-CGGCGCACu- -3'
miRNA:   3'- -GGCgGUGgAaCGUUUaGCCGCGUGua -5'
12335 5' -54.5 NC_003324.1 + 32825 0.69 0.579018
Target:  5'- cCCGCCACCaaaCcGGUCGGCGgGCu- -3'
miRNA:   3'- -GGCGGUGGaacGuUUAGCCGCgUGua -5'
12335 5' -54.5 NC_003324.1 + 5531 0.69 0.577915
Target:  5'- gCCGCCuGCCUacccagcgucgaUGCGGAgaagaacUCGGCGcCGCAg -3'
miRNA:   3'- -GGCGG-UGGA------------ACGUUU-------AGCCGC-GUGUa -5'
12335 5' -54.5 NC_003324.1 + 40254 0.69 0.535333
Target:  5'- aCUGCCGCCUUGCGugcGGUCcGGgGCuugGCGg -3'
miRNA:   3'- -GGCGGUGGAACGU---UUAG-CCgCG---UGUa -5'
12335 5' -54.5 NC_003324.1 + 13084 0.69 0.534254
Target:  5'- aUGCCGCCcUGCAGAUCGccagccgcgaacaGCGCAgCGUu -3'
miRNA:   3'- gGCGGUGGaACGUUUAGC-------------CGCGU-GUA- -5'
12335 5' -54.5 NC_003324.1 + 29471 0.7 0.503341
Target:  5'- aCgGCCGCCUggcUGCGGgcgcGUCGG-GCGCAUc -3'
miRNA:   3'- -GgCGGUGGA---ACGUU----UAGCCgCGUGUA- -5'
12335 5' -54.5 NC_003324.1 + 7266 0.71 0.472209
Target:  5'- aCGCCAUCgaGC---UCGGCGCGCu- -3'
miRNA:   3'- gGCGGUGGaaCGuuuAGCCGCGUGua -5'
12335 5' -54.5 NC_003324.1 + 35603 0.71 0.452004
Target:  5'- -aGCCACCaacgucggUGCGcagaAGUCGGCGCugGa -3'
miRNA:   3'- ggCGGUGGa-------ACGU----UUAGCCGCGugUa -5'
12335 5' -54.5 NC_003324.1 + 55492 0.72 0.403662
Target:  5'- aCGCCACUguucaagGCGGGcuUCGGCGCugAa -3'
miRNA:   3'- gGCGGUGGaa-----CGUUU--AGCCGCGugUa -5'
12335 5' -54.5 NC_003324.1 + 55111 0.73 0.341751
Target:  5'- gCCGuCCGCCUUGCcugccCGGCGCgACAc -3'
miRNA:   3'- -GGC-GGUGGAACGuuua-GCCGCG-UGUa -5'
12335 5' -54.5 NC_003324.1 + 41785 0.73 0.325368
Target:  5'- aCC-CCucuuACCUUGCGGAUUGGCGCAUc- -3'
miRNA:   3'- -GGcGG----UGGAACGUUUAGCCGCGUGua -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.