Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12336 | 3' | -52.5 | NC_003324.1 | + | 48977 | 0.66 | 0.869078 |
Target: 5'- gGCGgGUGg--CGGAGuCCUGgaugcGGGCg -3' miRNA: 3'- aCGCgCAUagaGCCUCuGGAUa----CUCG- -5' |
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12336 | 3' | -52.5 | NC_003324.1 | + | 17822 | 0.66 | 0.866639 |
Target: 5'- gGCGCGca-UUCGGGGugucgcccuugaacGCCUgGUGGGCg -3' miRNA: 3'- aCGCGCauaGAGCCUC--------------UGGA-UACUCG- -5' |
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12336 | 3' | -52.5 | NC_003324.1 | + | 32199 | 0.66 | 0.860859 |
Target: 5'- gUGCGCGgcAUCUUcGAGGCCcaaucGGGCg -3' miRNA: 3'- -ACGCGCa-UAGAGcCUCUGGaua--CUCG- -5' |
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12336 | 3' | -52.5 | NC_003324.1 | + | 50460 | 0.66 | 0.860859 |
Target: 5'- cUGCGCG-AUC-CGGAGGgCgaaGAGUg -3' miRNA: 3'- -ACGCGCaUAGaGCCUCUgGauaCUCG- -5' |
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12336 | 3' | -52.5 | NC_003324.1 | + | 14244 | 0.66 | 0.85581 |
Target: 5'- aGCGCGUccAgcucggucugucgcuUCUCGGAGACCgcaaacGCc -3' miRNA: 3'- aCGCGCA--U---------------AGAGCCUCUGGauacu-CG- -5' |
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12336 | 3' | -52.5 | NC_003324.1 | + | 41685 | 0.66 | 0.852395 |
Target: 5'- gGCGUGgcUCUCGcagaGGGGCUUucccGAGCg -3' miRNA: 3'- aCGCGCauAGAGC----CUCUGGAua--CUCG- -5' |
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12336 | 3' | -52.5 | NC_003324.1 | + | 53732 | 0.66 | 0.843691 |
Target: 5'- aGCGCGUAcaggaacCGGAGGCCgcucAUG-GCu -3' miRNA: 3'- aCGCGCAUaga----GCCUCUGGa---UACuCG- -5' |
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12336 | 3' | -52.5 | NC_003324.1 | + | 40054 | 0.67 | 0.835661 |
Target: 5'- gGCGCGacggaCUUGGAGAUUgcgcaggcuuucgagGUGAGCa -3' miRNA: 3'- aCGCGCaua--GAGCCUCUGGa--------------UACUCG- -5' |
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12336 | 3' | -52.5 | NC_003324.1 | + | 22037 | 0.67 | 0.816242 |
Target: 5'- uUGCGCGcGUC-CGacauGACCU-UGAGCa -3' miRNA: 3'- -ACGCGCaUAGaGCcu--CUGGAuACUCG- -5' |
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12336 | 3' | -52.5 | NC_003324.1 | + | 26321 | 0.67 | 0.804743 |
Target: 5'- gGCGUGgcagaugGUCagGGAGACCUAcuugcugcugccGAGCg -3' miRNA: 3'- aCGCGCa------UAGagCCUCUGGAUa-----------CUCG- -5' |
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12336 | 3' | -52.5 | NC_003324.1 | + | 38000 | 0.69 | 0.677185 |
Target: 5'- aGCGCGUauggacuuuucgccGUCUCGGAGuuACCgcUAUuGGCa -3' miRNA: 3'- aCGCGCA--------------UAGAGCCUC--UGG--AUAcUCG- -5' |
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12336 | 3' | -52.5 | NC_003324.1 | + | 45638 | 0.7 | 0.669407 |
Target: 5'- gGUuCGUcGUCUUGGAGGCCgacaaacAUGAGCc -3' miRNA: 3'- aCGcGCA-UAGAGCCUCUGGa------UACUCG- -5' |
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12336 | 3' | -52.5 | NC_003324.1 | + | 17317 | 1.13 | 0.00108 |
Target: 5'- cUGCGCGUAUCUCGGAGACCUAUGAGCg -3' miRNA: 3'- -ACGCGCAUAGAGCCUCUGGAUACUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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