miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12337 3' -54.4 NC_003324.1 + 17937 1.13 0.000865
Target:  5'- uCUAUCGCGUGUUCCGAGACGCCCACCa -3'
miRNA:   3'- -GAUAGCGCACAAGGCUCUGCGGGUGG- -5'
12337 3' -54.4 NC_003324.1 + 18108 0.77 0.251982
Target:  5'- cCUAUCGCaUGgcCCGuGGCGCCgGCCa -3'
miRNA:   3'- -GAUAGCGcACaaGGCuCUGCGGgUGG- -5'
12337 3' -54.4 NC_003324.1 + 32264 0.71 0.52778
Target:  5'- -gGUCGUGU----CGGGACGCUCGCCa -3'
miRNA:   3'- gaUAGCGCAcaagGCUCUGCGGGUGG- -5'
12337 3' -54.4 NC_003324.1 + 18689 0.7 0.581176
Target:  5'- -cGUCGCacaUGUUCCacGcCGCCCACCa -3'
miRNA:   3'- gaUAGCGc--ACAAGGcuCuGCGGGUGG- -5'
12337 3' -54.4 NC_003324.1 + 501 0.69 0.646506
Target:  5'- --uUCGCGgGcUCCGGGAUGCgCCAgCCc -3'
miRNA:   3'- gauAGCGCaCaAGGCUCUGCG-GGU-GG- -5'
12337 3' -54.4 NC_003324.1 + 16164 0.67 0.742875
Target:  5'- -cAUCGC-UGgcaCCGAGGCGggcaccgcagcuCCCGCCa -3'
miRNA:   3'- gaUAGCGcACaa-GGCUCUGC------------GGGUGG- -5'
12337 3' -54.4 NC_003324.1 + 45235 0.67 0.763364
Target:  5'- -gAUCGCGgugGUUCauu-GCGCgCCACCg -3'
miRNA:   3'- gaUAGCGCa--CAAGgcucUGCG-GGUGG- -5'
12337 3' -54.4 NC_003324.1 + 55434 0.67 0.763364
Target:  5'- -cGUCGUGUGgaCCGAcgcauGACGCaCGCUg -3'
miRNA:   3'- gaUAGCGCACaaGGCU-----CUGCGgGUGG- -5'
12337 3' -54.4 NC_003324.1 + 48708 0.67 0.763364
Target:  5'- aUGUUGCGgcgGagCCGgaugcGGGCGCCgACCu -3'
miRNA:   3'- gAUAGCGCa--CaaGGC-----UCUGCGGgUGG- -5'
12337 3' -54.4 NC_003324.1 + 15058 0.67 0.763364
Target:  5'- cCUG-CGCauagGUgCCGAcguGAUGCCCGCCg -3'
miRNA:   3'- -GAUaGCGca--CAaGGCU---CUGCGGGUGG- -5'
12337 3' -54.4 NC_003324.1 + 26063 0.67 0.73246
Target:  5'- cCUAUCGaucUGgUCUGGGGCGCCgaaggCACCa -3'
miRNA:   3'- -GAUAGCgc-ACaAGGCUCUGCGG-----GUGG- -5'
12337 3' -54.4 NC_003324.1 + 24348 0.66 0.793076
Target:  5'- --uUCGaCGUGUcaUUCGGGaACGCCacaGCCu -3'
miRNA:   3'- gauAGC-GCACA--AGGCUC-UGCGGg--UGG- -5'
12337 3' -54.4 NC_003324.1 + 52076 0.66 0.812076
Target:  5'- --uUCGCGUGgcaCGAG--GCCUGCCg -3'
miRNA:   3'- gauAGCGCACaagGCUCugCGGGUGG- -5'
12337 3' -54.4 NC_003324.1 + 26432 0.66 0.812076
Target:  5'- gUAUCGCGagcUGaaacaggCCGGGAUGCUCgaACCg -3'
miRNA:   3'- gAUAGCGC---ACaa-----GGCUCUGCGGG--UGG- -5'
12337 3' -54.4 NC_003324.1 + 23637 0.66 0.793076
Target:  5'- aUGUaC-CGUcg-CCGAGcGCGCCCGCCg -3'
miRNA:   3'- gAUA-GcGCAcaaGGCUC-UGCGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.