miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12338 3' -56.7 NC_003324.1 + 31068 0.66 0.636345
Target:  5'- --cGCUGcgacgGCCugauuguccgUGCCGGUCCUugCGGCa -3'
miRNA:   3'- guaCGACa----CGG----------ACGGUUAGGA--GCCGc -5'
12338 3' -56.7 NC_003324.1 + 21850 0.66 0.61435
Target:  5'- --cGCgcaGCCggGCC--UCCUCGGCGg -3'
miRNA:   3'- guaCGacaCGGa-CGGuuAGGAGCCGC- -5'
12338 3' -56.7 NC_003324.1 + 29859 0.66 0.592416
Target:  5'- --gGCUGUGCCgucgugacaucagGCaggguggauacggcgCGAUCUUCGGCGc -3'
miRNA:   3'- guaCGACACGGa------------CG---------------GUUAGGAGCCGC- -5'
12338 3' -56.7 NC_003324.1 + 35646 0.67 0.581495
Target:  5'- -cUGCUGUuugGCCUcgGCCuccUUCUUGGCGg -3'
miRNA:   3'- guACGACA---CGGA--CGGuu-AGGAGCCGC- -5'
12338 3' -56.7 NC_003324.1 + 25563 0.67 0.581495
Target:  5'- ---uCUGgccGCCUucGCCGagauuGUCCUCGGCGg -3'
miRNA:   3'- guacGACa--CGGA--CGGU-----UAGGAGCCGC- -5'
12338 3' -56.7 NC_003324.1 + 27677 0.67 0.559788
Target:  5'- uCAUGCgugGcGCCgaGCUucUCCUUGGCGa -3'
miRNA:   3'- -GUACGa--CaCGGa-CGGuuAGGAGCCGC- -5'
12338 3' -56.7 NC_003324.1 + 6052 0.67 0.527678
Target:  5'- cCGUGCUGcGCgCUGCauagCCauUCGGCGg -3'
miRNA:   3'- -GUACGACaCG-GACGguuaGG--AGCCGC- -5'
12338 3' -56.7 NC_003324.1 + 17797 0.68 0.517124
Target:  5'- -cUGCUGauggguaucGCCaGCCuGAUCUUCGGCGa -3'
miRNA:   3'- guACGACa--------CGGaCGG-UUAGGAGCCGC- -5'
12338 3' -56.7 NC_003324.1 + 6308 0.68 0.475821
Target:  5'- -uUGCUGcGCugCUGCUGcgCCUCGGCc -3'
miRNA:   3'- guACGACaCG--GACGGUuaGGAGCCGc -5'
12338 3' -56.7 NC_003324.1 + 11236 0.69 0.455792
Target:  5'- --cGCUGUGCgaGCCGG-CCgccagacCGGCGa -3'
miRNA:   3'- guaCGACACGgaCGGUUaGGa------GCCGC- -5'
12338 3' -56.7 NC_003324.1 + 52625 0.69 0.455792
Target:  5'- uCAUGCuUGUG-CUGCC--UCC-CGGCGg -3'
miRNA:   3'- -GUACG-ACACgGACGGuuAGGaGCCGC- -5'
12338 3' -56.7 NC_003324.1 + 19425 0.69 0.445949
Target:  5'- gAUGCUGcGCCUugGCCuuGUCCUuacCGGCa -3'
miRNA:   3'- gUACGACaCGGA--CGGu-UAGGA---GCCGc -5'
12338 3' -56.7 NC_003324.1 + 26157 0.69 0.445949
Target:  5'- -cUGCUGgcgGCCUGCaucauUCUgUCGGCGg -3'
miRNA:   3'- guACGACa--CGGACGguu--AGG-AGCCGC- -5'
12338 3' -56.7 NC_003324.1 + 32464 0.7 0.38952
Target:  5'- cCAUGCccucGUcGCCUucGCCGGcagCCUCGGCGa -3'
miRNA:   3'- -GUACGa---CA-CGGA--CGGUUa--GGAGCCGC- -5'
12338 3' -56.7 NC_003324.1 + 18423 0.92 0.010681
Target:  5'- uCAUGCUugGCCUGCCAAUCCUCGGCGc -3'
miRNA:   3'- -GUACGAcaCGGACGGUUAGGAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.