miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12338 5' -57.6 NC_003324.1 + 1517 0.68 0.469374
Target:  5'- -cCAgCGAGGauCCGGcGGCAGUGG-UGCg -3'
miRNA:   3'- gaGUgGUUCC--GGCC-CCGUCGCUaACG- -5'
12338 5' -57.6 NC_003324.1 + 48817 0.69 0.402724
Target:  5'- -cCACCGAGGCCaaugGGGGCGaCGAggUGa -3'
miRNA:   3'- gaGUGGUUCCGG----CCCCGUcGCUa-ACg -5'
12338 5' -57.6 NC_003324.1 + 9552 0.69 0.393701
Target:  5'- gUCAgCCGgaguGGGuCUGGGGUGGCGAUgccGCa -3'
miRNA:   3'- gAGU-GGU----UCC-GGCCCCGUCGCUAa--CG- -5'
12338 5' -57.6 NC_003324.1 + 5952 0.69 0.430564
Target:  5'- aUCcCCAAGGCCGGGuGCGGUu----- -3'
miRNA:   3'- gAGuGGUUCCGGCCC-CGUCGcuaacg -5'
12338 5' -57.6 NC_003324.1 + 50771 0.69 0.409118
Target:  5'- -cCGCCGAGGCgGGGGUcaccgucgaagauuGGCGcUUcGCa -3'
miRNA:   3'- gaGUGGUUCCGgCCCCG--------------UCGCuAA-CG- -5'
12338 5' -57.6 NC_003324.1 + 13177 0.71 0.296087
Target:  5'- gUCAgCGAGGCUGcgucGGCGGCGGUcgGCg -3'
miRNA:   3'- gAGUgGUUCCGGCc---CCGUCGCUAa-CG- -5'
12338 5' -57.6 NC_003324.1 + 44895 0.72 0.268012
Target:  5'- -aCGCCGGGGCgCGGGGgCuG-GAUUGCu -3'
miRNA:   3'- gaGUGGUUCCG-GCCCC-GuCgCUAACG- -5'
12338 5' -57.6 NC_003324.1 + 11762 0.72 0.28886
Target:  5'- uUCugUGAGGCCGuGGCAaUGGUUGCg -3'
miRNA:   3'- gAGugGUUCCGGCcCCGUcGCUAACG- -5'
12338 5' -57.6 NC_003324.1 + 38343 0.73 0.248396
Target:  5'- aUCACgAGGGCacCGGGGCGGCGcugGUc -3'
miRNA:   3'- gAGUGgUUCCG--GCCCCGUCGCuaaCG- -5'
12338 5' -57.6 NC_003324.1 + 25527 0.77 0.117111
Target:  5'- gCUCGCCAAgugggucGGCUGGGGCGGCc--UGCg -3'
miRNA:   3'- -GAGUGGUU-------CCGGCCCCGUCGcuaACG- -5'
12338 5' -57.6 NC_003324.1 + 18383 1.1 0.000485
Target:  5'- uCUCACCAAGGCCGGGGCAGCGAUUGCc -3'
miRNA:   3'- -GAGUGGUUCCGGCCCCGUCGCUAACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.