miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12339 3' -55.1 NC_003324.1 + 55050 0.68 0.613666
Target:  5'- gAGCGAagcagugcGACCUgugcaUUGACCAGGUGcuGGAu -3'
miRNA:   3'- -UUGCU--------CUGGA-----AGCUGGUCCGCuuCCU- -5'
12339 3' -55.1 NC_003324.1 + 45205 0.7 0.495148
Target:  5'- aGGCGAGAUCaUUGACCGuGGUGcGGGGAa -3'
miRNA:   3'- -UUGCUCUGGaAGCUGGU-CCGC-UUCCU- -5'
12339 3' -55.1 NC_003324.1 + 34931 0.77 0.194559
Target:  5'- gAGCGGGACCgcaucgcagagcagUUCGACgacggcgagcugCAGGCGAAGGAg -3'
miRNA:   3'- -UUGCUCUGG--------------AAGCUG------------GUCCGCUUCCU- -5'
12339 3' -55.1 NC_003324.1 + 30870 0.68 0.614769
Target:  5'- gGGCGAGACgUUCGACagcaagauggauacGGCGcAGGAc -3'
miRNA:   3'- -UUGCUCUGgAAGCUGgu------------CCGCuUCCU- -5'
12339 3' -55.1 NC_003324.1 + 25007 0.68 0.569754
Target:  5'- -uCGAGACaCUgCGACCGGGCGgcGu- -3'
miRNA:   3'- uuGCUCUG-GAaGCUGGUCCGCuuCcu -5'
12339 3' -55.1 NC_003324.1 + 20653 0.78 0.153475
Target:  5'- gGGCgGAGugCUUCGACCAGGCGGcgaugcuuGGAa -3'
miRNA:   3'- -UUG-CUCugGAAGCUGGUCCGCUu-------CCU- -5'
12339 3' -55.1 NC_003324.1 + 18619 1.07 0.001492
Target:  5'- cAACGAGACCUUCGACCAGGCGAAGGAa -3'
miRNA:   3'- -UUGCUCUGGAAGCUGGUCCGCUUCCU- -5'
12339 3' -55.1 NC_003324.1 + 15024 0.66 0.723129
Target:  5'- aGGCGAcGGCaggUCGAUCAuGGCGcAGGAc -3'
miRNA:   3'- -UUGCU-CUGga-AGCUGGU-CCGCuUCCU- -5'
12339 3' -55.1 NC_003324.1 + 2860 0.68 0.569754
Target:  5'- aGGCGguAGACCUgccaGAUCGGGCGAucaaagaucGGGAg -3'
miRNA:   3'- -UUGC--UCUGGAag--CUGGUCCGCU---------UCCU- -5'
12339 3' -55.1 NC_003324.1 + 2828 0.71 0.425296
Target:  5'- uGCGGuAUUUUCG-CCGGGCGAGGGGg -3'
miRNA:   3'- uUGCUcUGGAAGCuGGUCCGCUUCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.