Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12340 | 3' | -54.9 | NC_003324.1 | + | 30069 | 0.66 | 0.778405 |
Target: 5'- aGUGCAcCG--GCCGGGAUCGAugcGGAc -3' miRNA: 3'- gCGCGUaGCaaCGGCUCUAGCU---CCUc -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 32190 | 0.66 | 0.778405 |
Target: 5'- aCGCGCGUCG-UGCgCGGcaucuUCGAGGc- -3' miRNA: 3'- -GCGCGUAGCaACG-GCUcu---AGCUCCuc -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 22697 | 0.66 | 0.778405 |
Target: 5'- aGCGCAUCcacGCCGAGcUCGucGAa -3' miRNA: 3'- gCGCGUAGcaaCGGCUCuAGCucCUc -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 36687 | 0.66 | 0.776416 |
Target: 5'- uCGCGCGggcacaagGUCGcGAUCGAGGAa -3' miRNA: 3'- -GCGCGUagcaa---CGGCuCUAGCUCCUc -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 19394 | 0.66 | 0.758263 |
Target: 5'- gCGCGCGUCGcgccgUGCaUGAGGUCGGcuAGa -3' miRNA: 3'- -GCGCGUAGCa----ACG-GCUCUAGCUccUC- -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 6068 | 0.66 | 0.747995 |
Target: 5'- uGC-CAUCGcugGUCGAGAUCGccGAGg -3' miRNA: 3'- gCGcGUAGCaa-CGGCUCUAGCucCUC- -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 5372 | 0.66 | 0.747995 |
Target: 5'- aCGCGgGUUccgGCCGGGAucauagcgagaUCGAGGAu -3' miRNA: 3'- -GCGCgUAGcaaCGGCUCU-----------AGCUCCUc -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 45981 | 0.67 | 0.716539 |
Target: 5'- aGCGg--CGgcGCCGA-AUCGAGGAGc -3' miRNA: 3'- gCGCguaGCaaCGGCUcUAGCUCCUC- -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 49287 | 0.68 | 0.662612 |
Target: 5'- gGCGUucggAUCGUcgGCaggaAGAUCGAGGAGc -3' miRNA: 3'- gCGCG----UAGCAa-CGgc--UCUAGCUCCUC- -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 5418 | 0.68 | 0.618896 |
Target: 5'- gGCGcCGUUGgUGUCGAGAucgucggcgUCGAGGAu -3' miRNA: 3'- gCGC-GUAGCaACGGCUCU---------AGCUCCUc -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 17638 | 0.68 | 0.617803 |
Target: 5'- uCGCGCAUCGgcaUGCCGGaccuuugguuccGAUCGccgacgcGGGAa -3' miRNA: 3'- -GCGCGUAGCa--ACGGCU------------CUAGC-------UCCUc -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 32918 | 0.69 | 0.597068 |
Target: 5'- gGCGCGUCagUGgCGAuGAUCGAGGcGg -3' miRNA: 3'- gCGCGUAGcaACgGCU-CUAGCUCCuC- -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 13362 | 0.69 | 0.564567 |
Target: 5'- uGCGacgCGcUGCCGuacGGAUCGAGGAu -3' miRNA: 3'- gCGCguaGCaACGGC---UCUAGCUCCUc -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 33606 | 0.71 | 0.480769 |
Target: 5'- uGCGCAgcgCGUUGCCGAcGG-CGAuGAGa -3' miRNA: 3'- gCGCGUa--GCAACGGCU-CUaGCUcCUC- -5' |
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12340 | 3' | -54.9 | NC_003324.1 | + | 18864 | 1.08 | 0.001432 |
Target: 5'- cCGCGCAUCGUUGCCGAGAUCGAGGAGc -3' miRNA: 3'- -GCGCGUAGCAACGGCUCUAGCUCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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