miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12340 5' -57.3 NC_003324.1 + 18829 1.08 0.000709
Target:  5'- gGGCUCCGGCGUCAGCAACGAGCUGAUg -3'
miRNA:   3'- -CCGAGGCCGCAGUCGUUGCUCGACUA- -5'
12340 5' -57.3 NC_003324.1 + 32549 0.71 0.304947
Target:  5'- aGGCUgCCGGCGaaGGCGACGAGggcaUGGc -3'
miRNA:   3'- -CCGA-GGCCGCagUCGUUGCUCg---ACUa -5'
12340 5' -57.3 NC_003324.1 + 10210 0.71 0.312531
Target:  5'- uGUUCCGGCGUCGGCGggguguAgGGGgaGAUg -3'
miRNA:   3'- cCGAGGCCGCAGUCGU------UgCUCgaCUA- -5'
12340 5' -57.3 NC_003324.1 + 21556 0.71 0.328125
Target:  5'- cGGCaUCCGGCag-GGCAACGAGCUc-- -3'
miRNA:   3'- -CCG-AGGCCGcagUCGUUGCUCGAcua -5'
12340 5' -57.3 NC_003324.1 + 57234 0.68 0.441062
Target:  5'- uGGCUUCgcacucagucgggGGCGUCAGCAGgGuuucgagcuucauGGCUGAUc -3'
miRNA:   3'- -CCGAGG-------------CCGCAGUCGUUgC-------------UCGACUA- -5'
12340 5' -57.3 NC_003324.1 + 35028 0.68 0.442996
Target:  5'- aGCagCGGCGgcggCAGCAGCGGcCUGAUc -3'
miRNA:   3'- cCGagGCCGCa---GUCGUUGCUcGACUA- -5'
12340 5' -57.3 NC_003324.1 + 15243 0.68 0.491809
Target:  5'- cGGaaCCGGCGauggagaUCGGCGGCGAGCc--- -3'
miRNA:   3'- -CCgaGGCCGC-------AGUCGUUGCUCGacua -5'
12340 5' -57.3 NC_003324.1 + 28902 0.68 0.492831
Target:  5'- aGGCU--GGCGUCAagcGCAAUGAGCgcgUGAUg -3'
miRNA:   3'- -CCGAggCCGCAGU---CGUUGCUCG---ACUA- -5'
12340 5' -57.3 NC_003324.1 + 52304 0.67 0.523939
Target:  5'- gGGCggCCGGCGUCuGCGACcccAGCa--- -3'
miRNA:   3'- -CCGa-GGCCGCAGuCGUUGc--UCGacua -5'
12340 5' -57.3 NC_003324.1 + 38088 0.66 0.566506
Target:  5'- uGGCgaaGcGCGUCGGCGcCGuGCUGGUg -3'
miRNA:   3'- -CCGaggC-CGCAGUCGUuGCuCGACUA- -5'
12340 5' -57.3 NC_003324.1 + 25692 0.66 0.577298
Target:  5'- aGCcgugCCGGCG-CAGCAGCG-GCcGAc -3'
miRNA:   3'- cCGa---GGCCGCaGUCGUUGCuCGaCUa -5'
12340 5' -57.3 NC_003324.1 + 17509 0.66 0.577298
Target:  5'- gGGCUCC-GCGUCAGacCGACGAGg---- -3'
miRNA:   3'- -CCGAGGcCGCAGUC--GUUGCUCgacua -5'
12340 5' -57.3 NC_003324.1 + 14443 0.66 0.588134
Target:  5'- uGGCgcccaugCCGGCGUCcaAGCAucgGCGGaccuuGCUGGc -3'
miRNA:   3'- -CCGa------GGCCGCAG--UCGU---UGCU-----CGACUa -5'
12340 5' -57.3 NC_003324.1 + 21580 0.66 0.597918
Target:  5'- uGGUaCCGGCGcccaucuUCGGCGuCGAGCcGAa -3'
miRNA:   3'- -CCGaGGCCGC-------AGUCGUuGCUCGaCUa -5'
12340 5' -57.3 NC_003324.1 + 31138 0.66 0.599006
Target:  5'- aGGCcgUCGcagcGCGUCAGCAG-GAGUUGAa -3'
miRNA:   3'- -CCGa-GGC----CGCAGUCGUUgCUCGACUa -5'
12340 5' -57.3 NC_003324.1 + 56197 0.66 0.609907
Target:  5'- uGUUCCGG-GUUGGCGGCGAGaacgGAa -3'
miRNA:   3'- cCGAGGCCgCAGUCGUUGCUCga--CUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.