miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12341 5' -53.2 NC_003324.1 + 21762 0.71 0.552158
Target:  5'- cUCu-GCAGGgCGAGGAACUcguccGGCGACa -3'
miRNA:   3'- -AGuuCGUCCgGCUUCUUGAc----CUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 11589 0.66 0.792032
Target:  5'- ---cGCGGcuccuGCCGGAG-ACUGGuGCGACg -3'
miRNA:   3'- aguuCGUC-----CGGCUUCuUGACC-UGCUG- -5'
12341 5' -53.2 NC_003324.1 + 30491 0.66 0.791036
Target:  5'- cCGAGCAGGCCcucGGAaACUGcgccugcgaccguGGCGACc -3'
miRNA:   3'- aGUUCGUCCGGcu-UCU-UGAC-------------CUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 17635 0.67 0.75097
Target:  5'- cCGAGCucGGGcCCGAGGAuaucGACGACg -3'
miRNA:   3'- aGUUCG--UCC-GGCUUCUugacCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 24556 0.69 0.663602
Target:  5'- -aGAGCAGuGCCgGAAGAucgucaccGCUgcGGGCGACc -3'
miRNA:   3'- agUUCGUC-CGG-CUUCU--------UGA--CCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 55033 0.69 0.652422
Target:  5'- cCGGGCAGGCaaggCGGAcGGCUGGgcugccGCGACg -3'
miRNA:   3'- aGUUCGUCCG----GCUUcUUGACC------UGCUG- -5'
12341 5' -53.2 NC_003324.1 + 15470 0.69 0.652422
Target:  5'- -gAGGCcaAGGCCGAGGAuagcGACGACu -3'
miRNA:   3'- agUUCG--UCCGGCUUCUugacCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 29876 0.69 0.627773
Target:  5'- aUCAGGCAGGgUGGAuacggcgcgaucuucGGcgcgcugcuggccauGCUGGACGGCg -3'
miRNA:   3'- -AGUUCGUCCgGCUU---------------CU---------------UGACCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 18591 0.7 0.596443
Target:  5'- uUUAGGCGGGCCau----CUGGugGGCg -3'
miRNA:   3'- -AGUUCGUCCGGcuucuuGACCugCUG- -5'
12341 5' -53.2 NC_003324.1 + 49355 0.7 0.585302
Target:  5'- cCAacAGCGGuGUCGAcGAuCUGGGCGACc -3'
miRNA:   3'- aGU--UCGUC-CGGCUuCUuGACCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 42551 0.67 0.781996
Target:  5'- gCAAGCucaAGGUgaAAGAAUgGGACGACa -3'
miRNA:   3'- aGUUCG---UCCGgcUUCUUGaCCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 56489 0.67 0.781996
Target:  5'- gCAAugGGGgCGAGGAACggaaGGGCGGCu -3'
miRNA:   3'- aGUUcgUCCgGCUUCUUGa---CCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 17099 0.66 0.795998
Target:  5'- aUCAAgacGCGGGCC-AAGAACgcagcgaaacgugaGGAUGGCg -3'
miRNA:   3'- -AGUU---CGUCCGGcUUCUUGa-------------CCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 35455 0.66 0.801894
Target:  5'- cCGAGCAGGCUGcAGcAGCacaGGcCGACc -3'
miRNA:   3'- aGUUCGUCCGGCuUC-UUGa--CCuGCUG- -5'
12341 5' -53.2 NC_003324.1 + 32166 0.66 0.801894
Target:  5'- aCGAGCcgaggcgcagcgAGGCCGAAGAGCcauuUGACg -3'
miRNA:   3'- aGUUCG------------UCCGGCUUCUUGaccuGCUG- -5'
12341 5' -53.2 NC_003324.1 + 2730 0.66 0.820116
Target:  5'- -aGGGCaAGGUCGAugacguuuuGGGACUGGaucaacaGCGGCa -3'
miRNA:   3'- agUUCG-UCCGGCU---------UCUUGACC-------UGCUG- -5'
12341 5' -53.2 NC_003324.1 + 34856 0.66 0.821055
Target:  5'- aUCGAGCAGGCCcuugacgauuuGAAGGAUcagcGGACc-- -3'
miRNA:   3'- -AGUUCGUCCGG-----------CUUCUUGa---CCUGcug -5'
12341 5' -53.2 NC_003324.1 + 49347 0.66 0.830332
Target:  5'- ---cGCAGG-CGAGGAuCUGGACacgaaGACg -3'
miRNA:   3'- aguuCGUCCgGCUUCUuGACCUG-----CUG- -5'
12341 5' -53.2 NC_003324.1 + 39784 0.66 0.830332
Target:  5'- ---cGCAGGCCGGGcacaUGGcGCGACg -3'
miRNA:   3'- aguuCGUCCGGCUUcuugACC-UGCUG- -5'
12341 5' -53.2 NC_003324.1 + 19323 1.11 0.001147
Target:  5'- cUCAAGCAGGCCGAAGAACUGGACGACa -3'
miRNA:   3'- -AGUUCGUCCGGCUUCUUGACCUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.