miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12342 3' -46.9 NC_003324.1 + 16511 0.67 0.985514
Target:  5'- cGUUGAuGUGCAgcggaucggccugUGCGUgCUCGGCg--- -3'
miRNA:   3'- -CAACUuUAUGU-------------GCGCA-GAGCCGaaac -5'
12342 3' -46.9 NC_003324.1 + 32180 0.67 0.985708
Target:  5'- -gUGAuugccgACGCGCGUCgugcgCGGCa--- -3'
miRNA:   3'- caACUuua---UGUGCGCAGa----GCCGaaac -5'
12342 3' -46.9 NC_003324.1 + 27598 0.66 0.987543
Target:  5'- --cGAGGguuuuUGCuGCGCGUC-CGGCUUUa -3'
miRNA:   3'- caaCUUU-----AUG-UGCGCAGaGCCGAAAc -5'
12342 3' -46.9 NC_003324.1 + 23397 0.66 0.990663
Target:  5'- ------uUugACGCG-CUCGGCUUUc -3'
miRNA:   3'- caacuuuAugUGCGCaGAGCCGAAAc -5'
12342 3' -46.9 NC_003324.1 + 30628 0.66 0.987543
Target:  5'- -cUGGAGUAgagcaGCGCGUCgcagCGGCa--- -3'
miRNA:   3'- caACUUUAUg----UGCGCAGa---GCCGaaac -5'
12342 3' -46.9 NC_003324.1 + 34432 0.68 0.976249
Target:  5'- cGUUGAGGcuUACgaGCGCGagCUCGGCa--- -3'
miRNA:   3'- -CAACUUU--AUG--UGCGCa-GAGCCGaaac -5'
12342 3' -46.9 NC_003324.1 + 48746 0.68 0.970086
Target:  5'- --cGAGAUGCGCagccaGCGUCUCcuGGCUc-- -3'
miRNA:   3'- caaCUUUAUGUG-----CGCAGAG--CCGAaac -5'
12342 3' -46.9 NC_003324.1 + 19537 1.08 0.008253
Target:  5'- gGUUGAAAUACACGCGUCUCGGCUUUGc -3'
miRNA:   3'- -CAACUUUAUGUGCGCAGAGCCGAAAC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.