miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12344 5' -55.2 NC_003324.1 + 54798 0.68 0.620826
Target:  5'- aGAUGCGcCGAUCGAGCGU--UCg-- -3'
miRNA:   3'- gCUACGCcGCUAGCUCGCGcaAGagu -5'
12344 5' -55.2 NC_003324.1 + 52992 0.72 0.414493
Target:  5'- aCGAUGCGGCGGaacucuagcUCGAcacguaGCGCGUcgauauggCUCAu -3'
miRNA:   3'- -GCUACGCCGCU---------AGCU------CGCGCAa-------GAGU- -5'
12344 5' -55.2 NC_003324.1 + 40591 0.68 0.642685
Target:  5'- uCGAUcGUGGCuccAUCGGGCGUGgugcgCUCAg -3'
miRNA:   3'- -GCUA-CGCCGc--UAGCUCGCGCaa---GAGU- -5'
12344 5' -55.2 NC_003324.1 + 32385 0.73 0.368723
Target:  5'- aGAUGCGGCGccgcgcagaggccGUUGucgccAGCGUGUUCUCu -3'
miRNA:   3'- gCUACGCCGC-------------UAGC-----UCGCGCAAGAGu -5'
12344 5' -55.2 NC_003324.1 + 29480 0.66 0.718346
Target:  5'- uGGcUGCgGGCGcGUCGGGCGCa-UCUCGg -3'
miRNA:   3'- gCU-ACG-CCGC-UAGCUCGCGcaAGAGU- -5'
12344 5' -55.2 NC_003324.1 + 27467 0.67 0.661238
Target:  5'- gGAUGCGGCGAUgCGAacuucuccgccgaaGUGcCGUUC-CAu -3'
miRNA:   3'- gCUACGCCGCUA-GCU--------------CGC-GCAAGaGU- -5'
12344 5' -55.2 NC_003324.1 + 23536 0.66 0.728906
Target:  5'- uCGGUGCcccacagcguGGCGG-CGGGCGCG--CUCGg -3'
miRNA:   3'- -GCUACG----------CCGCUaGCUCGCGCaaGAGU- -5'
12344 5' -55.2 NC_003324.1 + 22966 0.68 0.642685
Target:  5'- gCGAUGCGaGCGAaCaGGCGCuugcgGUUCUCc -3'
miRNA:   3'- -GCUACGC-CGCUaGcUCGCG-----CAAGAGu -5'
12344 5' -55.2 NC_003324.1 + 21387 0.66 0.749729
Target:  5'- uCGAucgucUGCcacguccGCGcAUCGAGCGUGUUCUUg -3'
miRNA:   3'- -GCU-----ACGc------CGC-UAGCUCGCGCAAGAGu -5'
12344 5' -55.2 NC_003324.1 + 21313 0.67 0.707702
Target:  5'- ---cGcCGGCGAuauccUCGAuuucGCGCGUUUUCAg -3'
miRNA:   3'- gcuaC-GCCGCU-----AGCU----CGCGCAAGAGU- -5'
12344 5' -55.2 NC_003324.1 + 20547 1.09 0.001175
Target:  5'- gCGAUGCGGCGAUCGAGCGCGUUCUCAa -3'
miRNA:   3'- -GCUACGCCGCUAGCUCGCGCAAGAGU- -5'
12344 5' -55.2 NC_003324.1 + 17792 0.69 0.588134
Target:  5'- uGAUGcCGGCGAUCuGGUaGCGUgcCUCAc -3'
miRNA:   3'- gCUAC-GCCGCUAGcUCG-CGCAa-GAGU- -5'
12344 5' -55.2 NC_003324.1 + 8814 0.69 0.577298
Target:  5'- uGGUGCGGCcuUCGAGCGUaGUUacgaUCGu -3'
miRNA:   3'- gCUACGCCGcuAGCUCGCG-CAAg---AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.