miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12345 3' -53 NC_003324.1 + 18210 0.67 0.794981
Target:  5'- cCGGCGUCgAAuACaCGCCgcugCGCGCu -3'
miRNA:   3'- -GUUGCAGgUUuUG-GCGGagcaGCGCG- -5'
12345 3' -53 NC_003324.1 + 13983 0.67 0.794981
Target:  5'- aCAACG-CUAuAACgGgC-CGUCGCGCa -3'
miRNA:   3'- -GUUGCaGGUuUUGgCgGaGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 5915 0.67 0.785141
Target:  5'- --gUGUCCGGAACCGCC-CGguaGUGa -3'
miRNA:   3'- guuGCAGGUUUUGGCGGaGCag-CGCg -5'
12345 3' -53 NC_003324.1 + 12404 0.68 0.77514
Target:  5'- aCAAUGU-CGGAGCCGa--CGUUGCGCg -3'
miRNA:   3'- -GUUGCAgGUUUUGGCggaGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 16034 0.68 0.77514
Target:  5'- cCAACGcCC---ACCGCCUUGUCGa-- -3'
miRNA:   3'- -GUUGCaGGuuuUGGCGGAGCAGCgcg -5'
12345 3' -53 NC_003324.1 + 52167 0.68 0.77514
Target:  5'- uCGGCGUCCuuacGGCagGCCUCGUgccaCGCGa -3'
miRNA:   3'- -GUUGCAGGuu--UUGg-CGGAGCA----GCGCg -5'
12345 3' -53 NC_003324.1 + 19090 0.68 0.77514
Target:  5'- -cGCGUUCGAGGCCaGCCg---CGUGCa -3'
miRNA:   3'- guUGCAGGUUUUGG-CGGagcaGCGCG- -5'
12345 3' -53 NC_003324.1 + 34093 0.68 0.754702
Target:  5'- --cUGUCCAugAGACCGagUCGaacUCGCGCa -3'
miRNA:   3'- guuGCAGGU--UUUGGCggAGC---AGCGCG- -5'
12345 3' -53 NC_003324.1 + 19639 0.68 0.754702
Target:  5'- ---gGUCCAAcauGACCGCCgUCGgcgaguauaugCGCGUg -3'
miRNA:   3'- guugCAGGUU---UUGGCGG-AGCa----------GCGCG- -5'
12345 3' -53 NC_003324.1 + 2627 0.68 0.754702
Target:  5'- aCGGCGUgCCGucuGCCGUC-CGUCGCc- -3'
miRNA:   3'- -GUUGCA-GGUuu-UGGCGGaGCAGCGcg -5'
12345 3' -53 NC_003324.1 + 21299 0.68 0.754702
Target:  5'- -cGCGUUC---GCCGCCUCGcCG-GCg -3'
miRNA:   3'- guUGCAGGuuuUGGCGGAGCaGCgCG- -5'
12345 3' -53 NC_003324.1 + 19286 0.68 0.73376
Target:  5'- aCAACGUgCGcaaggcgauggAGAUCGCCcagCGcCGCGCa -3'
miRNA:   3'- -GUUGCAgGU-----------UUUGGCGGa--GCaGCGCG- -5'
12345 3' -53 NC_003324.1 + 14454 0.69 0.723129
Target:  5'- cCGGCGUCCAAgcaucggcgGACCuuGCUggcacCGUCGCGg -3'
miRNA:   3'- -GUUGCAGGUU---------UUGG--CGGa----GCAGCGCg -5'
12345 3' -53 NC_003324.1 + 22090 0.69 0.712407
Target:  5'- -uGCGcUCGAcAugCGCCUCGUCGaUGCg -3'
miRNA:   3'- guUGCaGGUU-UugGCGGAGCAGC-GCG- -5'
12345 3' -53 NC_003324.1 + 7750 0.69 0.701606
Target:  5'- -uAUGUCCgAGAGCaCGCCUCGcagggagGCGCg -3'
miRNA:   3'- guUGCAGG-UUUUG-GCGGAGCag-----CGCG- -5'
12345 3' -53 NC_003324.1 + 8276 0.69 0.690736
Target:  5'- aCAACGUCCGuAGUCGUCgcCGUCGCaGCc -3'
miRNA:   3'- -GUUGCAGGUuUUGGCGGa-GCAGCG-CG- -5'
12345 3' -53 NC_003324.1 + 39018 0.7 0.668837
Target:  5'- uGACGaUCUucu-CCGCCuUCGUCGgGCu -3'
miRNA:   3'- gUUGC-AGGuuuuGGCGG-AGCAGCgCG- -5'
12345 3' -53 NC_003324.1 + 4786 0.7 0.667738
Target:  5'- gGAUuUCCAGccAGCCGCCcuggucgUUGUUGCGCa -3'
miRNA:   3'- gUUGcAGGUU--UUGGCGG-------AGCAGCGCG- -5'
12345 3' -53 NC_003324.1 + 31237 0.7 0.65783
Target:  5'- cCAGCG-CCAGcGCCGCCggcCGcacUGCGCg -3'
miRNA:   3'- -GUUGCaGGUUuUGGCGGa--GCa--GCGCG- -5'
12345 3' -53 NC_003324.1 + 14607 0.7 0.65783
Target:  5'- gAGCG-CCAG---CGCCUUGUCGCGg -3'
miRNA:   3'- gUUGCaGGUUuugGCGGAGCAGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.