miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12345 5' -61.5 NC_003324.1 + 21602 1.1 0.000263
Target:  5'- uCGAUGCGCCGUGGCGGCCGUCCGACCu -3'
miRNA:   3'- -GCUACGCGGCACCGCCGGCAGGCUGG- -5'
12345 5' -61.5 NC_003324.1 + 14600 0.73 0.151316
Target:  5'- gGcgGCGCaggcgguagCGUGGCGGCCGgagcuaCGGCCc -3'
miRNA:   3'- gCuaCGCG---------GCACCGCCGGCag----GCUGG- -5'
12345 5' -61.5 NC_003324.1 + 29226 0.73 0.159366
Target:  5'- aCGGUGCGCUcaccaagacGGCGGCUGUUCgGGCCu -3'
miRNA:   3'- -GCUACGCGGca-------CCGCCGGCAGG-CUGG- -5'
12345 5' -61.5 NC_003324.1 + 12123 0.72 0.20054
Target:  5'- gCGcUGCGUCGUGaUGGaCCGUCCGcCCg -3'
miRNA:   3'- -GCuACGCGGCACcGCC-GGCAGGCuGG- -5'
12345 5' -61.5 NC_003324.1 + 23752 0.72 0.20257
Target:  5'- gCGAcguUGCGCCGgaaaucgggguccgaUucGGCGGCgCGUUCGGCCu -3'
miRNA:   3'- -GCU---ACGCGGC---------------A--CCGCCG-GCAGGCUGG- -5'
12345 5' -61.5 NC_003324.1 + 31621 0.71 0.210867
Target:  5'- gCGG-GCGCgCGUGGCGGCCauucUCaCGACg -3'
miRNA:   3'- -GCUaCGCG-GCACCGCCGGc---AG-GCUGg -5'
12345 5' -61.5 NC_003324.1 + 55132 0.7 0.250664
Target:  5'- --cUGCGCCGUcGCGgcagcccaGCCGUCCG-CCu -3'
miRNA:   3'- gcuACGCGGCAcCGC--------CGGCAGGCuGG- -5'
12345 5' -61.5 NC_003324.1 + 24832 0.7 0.250664
Target:  5'- gGAUcGCGCCGacaaGGuCGGCCGUCUuGGCa -3'
miRNA:   3'- gCUA-CGCGGCa---CC-GCCGGCAGG-CUGg -5'
12345 5' -61.5 NC_003324.1 + 44408 0.7 0.256208
Target:  5'- ---cGCGCCGUGGCugcagaggcuaucGGCCGcgCC-ACCg -3'
miRNA:   3'- gcuaCGCGGCACCG-------------CCGGCa-GGcUGG- -5'
12345 5' -61.5 NC_003324.1 + 36751 0.69 0.289534
Target:  5'- cCGAUGCGaggcCCGUGGagcgcuGGCCGguguuuucgagcUCCGGCUc -3'
miRNA:   3'- -GCUACGC----GGCACCg-----CCGGC------------AGGCUGG- -5'
12345 5' -61.5 NC_003324.1 + 52673 0.69 0.310679
Target:  5'- cCGcAUGCGCgagCGUGGaUGGUCGaUCCGGCg -3'
miRNA:   3'- -GC-UACGCG---GCACC-GCCGGC-AGGCUGg -5'
12345 5' -61.5 NC_003324.1 + 44595 0.68 0.317983
Target:  5'- aGAcGCaCCGcaUGcGCGuGCCGUCCGAUCg -3'
miRNA:   3'- gCUaCGcGGC--AC-CGC-CGGCAGGCUGG- -5'
12345 5' -61.5 NC_003324.1 + 21157 0.68 0.325417
Target:  5'- ---cGCGCCGcGGCGGCCGacaaGGCa -3'
miRNA:   3'- gcuaCGCGGCaCCGCCGGCagg-CUGg -5'
12345 5' -61.5 NC_003324.1 + 13173 0.68 0.331455
Target:  5'- gCGAggcUGCGUCGgcggcggucggcGGCGGCgGUaCCGGCUg -3'
miRNA:   3'- -GCU---ACGCGGCa-----------CCGCCGgCA-GGCUGG- -5'
12345 5' -61.5 NC_003324.1 + 23992 0.67 0.3645
Target:  5'- uCGAcGCGCUGguagGGCGGCgGUagGGCUg -3'
miRNA:   3'- -GCUaCGCGGCa---CCGCCGgCAggCUGG- -5'
12345 5' -61.5 NC_003324.1 + 42840 0.67 0.38438
Target:  5'- uCGcgGaCGCCGUauugcugguauucgaGGCuGCCGgCCGGCCc -3'
miRNA:   3'- -GCuaC-GCGGCA---------------CCGcCGGCaGGCUGG- -5'
12345 5' -61.5 NC_003324.1 + 32470 0.67 0.389461
Target:  5'- ---cGCGCCGaGGUGGUgcgagaGcCCGACCa -3'
miRNA:   3'- gcuaCGCGGCaCCGCCGg-----CaGGCUGG- -5'
12345 5' -61.5 NC_003324.1 + 33928 0.66 0.412862
Target:  5'- uCGAUGUggaccucuacgauuGCCGcgaGGCGGCCGUgCaaGCCg -3'
miRNA:   3'- -GCUACG--------------CGGCa--CCGCCGGCAgGc-UGG- -5'
12345 5' -61.5 NC_003324.1 + 8482 0.66 0.415516
Target:  5'- ---cGCcCCGaUGGUGGCCGgagCUGAUCg -3'
miRNA:   3'- gcuaCGcGGC-ACCGCCGGCa--GGCUGG- -5'
12345 5' -61.5 NC_003324.1 + 54798 0.66 0.415516
Target:  5'- aGAUGCGCCGau-CGaG-CGUUCGACCg -3'
miRNA:   3'- gCUACGCGGCaccGC-CgGCAGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.