Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12347 | 3' | -53.9 | NC_003324.1 | + | 16251 | 0.66 | 0.793569 |
Target: 5'- aGCUgcgGUgcCCGCCUCgGUGCcagcgaugccuGGCGCGg -3' miRNA: 3'- gCGGa--UAa-GGUGGAGaUACG-----------UCGCGC- -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 1804 | 0.66 | 0.793569 |
Target: 5'- uCGCuCUcgUCCACCUCgucgaGCucgguccaaGGCGUGg -3' miRNA: 3'- -GCG-GAuaAGGUGGAGaua--CG---------UCGCGC- -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 16690 | 0.66 | 0.777558 |
Target: 5'- cCGCCUGUUgUGauuucuucguguaacCCUUgucgAUGCAGCGCu -3' miRNA: 3'- -GCGGAUAAgGU---------------GGAGa---UACGUCGCGc -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 21528 | 0.66 | 0.773491 |
Target: 5'- gGCCg---CCACggcgcaUCgaugugAUGCAGCGCGa -3' miRNA: 3'- gCGGauaaGGUGg-----AGa-----UACGUCGCGC- -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 53760 | 0.66 | 0.773491 |
Target: 5'- gCGCCUGUUUCGCCguaucaaGCucGGCGCu -3' miRNA: 3'- -GCGGAUAAGGUGGagaua--CG--UCGCGc -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 19172 | 0.67 | 0.74228 |
Target: 5'- uGCUUGUagCGguCCUCUGcGCGGCGCu -3' miRNA: 3'- gCGGAUAagGU--GGAGAUaCGUCGCGc -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 48272 | 0.67 | 0.74228 |
Target: 5'- gGCCUAUuuUCCACC-CccUGCagcagaucgacaAGCGCGg -3' miRNA: 3'- gCGGAUA--AGGUGGaGauACG------------UCGCGC- -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 53926 | 0.67 | 0.731632 |
Target: 5'- aGUC-AUUCCACUUCUcgGCAuaGCa -3' miRNA: 3'- gCGGaUAAGGUGGAGAuaCGUcgCGc -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 29002 | 0.67 | 0.720881 |
Target: 5'- gCGUCgAUUUCGCUUCcuuaGCAGCGCGc -3' miRNA: 3'- -GCGGaUAAGGUGGAGaua-CGUCGCGC- -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 5198 | 0.67 | 0.71004 |
Target: 5'- uCGCUUA--CC-CCUCUAUcGCuGGCGCGg -3' miRNA: 3'- -GCGGAUaaGGuGGAGAUA-CG-UCGCGC- -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 8207 | 0.67 | 0.71004 |
Target: 5'- gCGCCUGgcacuucgaCCAUCUCUGUGaCGG-GCGu -3' miRNA: 3'- -GCGGAUaa-------GGUGGAGAUAC-GUCgCGC- -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 3007 | 0.67 | 0.71004 |
Target: 5'- gGCCcagUAaUUCGCCUCUAUGCGGU-CGa -3' miRNA: 3'- gCGG---AUaAGGUGGAGAUACGUCGcGC- -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 26311 | 0.68 | 0.666007 |
Target: 5'- aCGUCUGUUCCgcgGCUUCUuu-CAGCGCc -3' miRNA: 3'- -GCGGAUAAGG---UGGAGAuacGUCGCGc -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 49932 | 0.68 | 0.65489 |
Target: 5'- uGCCguacUCCGCCUUgAUGCcAGcCGCGg -3' miRNA: 3'- gCGGaua-AGGUGGAGaUACG-UC-GCGC- -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 9243 | 0.68 | 0.65489 |
Target: 5'- uCGCCauUGUuaUCgACCgCUAuuUGCGGCGCGg -3' miRNA: 3'- -GCGG--AUA--AGgUGGaGAU--ACGUCGCGC- -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 53568 | 0.69 | 0.6326 |
Target: 5'- uCGCCggcAUUCgGCCUCg--GCuuccGCGCGg -3' miRNA: 3'- -GCGGa--UAAGgUGGAGauaCGu---CGCGC- -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 1399 | 0.69 | 0.599187 |
Target: 5'- gCGCCgacgGUgcugggcguucUUCGCCUCgucgaGCAGCGCGa -3' miRNA: 3'- -GCGGa---UA-----------AGGUGGAGaua--CGUCGCGC- -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 33765 | 0.7 | 0.566031 |
Target: 5'- aGCCUGUgauGCCUUggcgGCAGCGCa -3' miRNA: 3'- gCGGAUAaggUGGAGaua-CGUCGCGc -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 5956 | 0.71 | 0.511968 |
Target: 5'- aGCgaaCUAc-CCGCCgaauggCUAUGCAGCGCGa -3' miRNA: 3'- gCG---GAUaaGGUGGa-----GAUACGUCGCGC- -5' |
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12347 | 3' | -53.9 | NC_003324.1 | + | 55112 | 0.72 | 0.420784 |
Target: 5'- aGCCg--UCCGCCUUgccUGCccGGCGCGa -3' miRNA: 3'- gCGGauaAGGUGGAGau-ACG--UCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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