miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12348 3' -55.2 NC_003324.1 + 28239 0.68 0.602641
Target:  5'- cGCGUCAUCGAcuGcUGCGaCUgGUGCCGGa -3'
miRNA:   3'- -UGUAGUAGCU--CaACGC-GGgCGUGGUC- -5'
12348 3' -55.2 NC_003324.1 + 44833 0.68 0.613666
Target:  5'- gGCGUCAUUGGc--GUGCCCGCugCu- -3'
miRNA:   3'- -UGUAGUAGCUcaaCGCGGGCGugGuc -5'
12348 3' -55.2 NC_003324.1 + 50241 0.67 0.635755
Target:  5'- gACAUgAUCGAGgcGaaaGCCCGCGuCgAGa -3'
miRNA:   3'- -UGUAgUAGCUCaaCg--CGGGCGU-GgUC- -5'
12348 3' -55.2 NC_003324.1 + 35843 0.66 0.732701
Target:  5'- cCAUCAgggauUCGAccUGCGCCuggcgaacaguggCGCGCCAGu -3'
miRNA:   3'- uGUAGU-----AGCUcaACGCGG-------------GCGUGGUC- -5'
12348 3' -55.2 NC_003324.1 + 54112 0.66 0.73376
Target:  5'- cGCAUCAccaaccUCGAaaaGUUgGCGCCUGCGCa-- -3'
miRNA:   3'- -UGUAGU------AGCU---CAA-CGCGGGCGUGguc -5'
12348 3' -55.2 NC_003324.1 + 32548 0.68 0.580676
Target:  5'- aGCuuuUCGUCuccGUUGCGCUCGUGCCAu -3'
miRNA:   3'- -UGu--AGUAGcu-CAACGCGGGCGUGGUc -5'
12348 3' -55.2 NC_003324.1 + 23315 1.09 0.00101
Target:  5'- gACAUCAUCGAGUUGCGCCCGCACCAGa -3'
miRNA:   3'- -UGUAGUAGCUCAACGCGGGCGUGGUC- -5'
12348 3' -55.2 NC_003324.1 + 15735 0.74 0.268788
Target:  5'- cGCGUCAUCGAGc-GCGCCgGgGCCGu -3'
miRNA:   3'- -UGUAGUAGCUCaaCGCGGgCgUGGUc -5'
12348 3' -55.2 NC_003324.1 + 1621 0.73 0.328385
Target:  5'- --uUCAUCGGGgccauaGCGCCgCGCACCAc -3'
miRNA:   3'- uguAGUAGCUCaa----CGCGG-GCGUGGUc -5'
12348 3' -55.2 NC_003324.1 + 39870 0.72 0.379152
Target:  5'- uCGUCAUCGAGggcgagGUGCaCCGUGCCGa -3'
miRNA:   3'- uGUAGUAGCUCaa----CGCG-GGCGUGGUc -5'
12348 3' -55.2 NC_003324.1 + 49718 0.7 0.464525
Target:  5'- aGCGUCGUCGaAGUUGCGaUCGUuggcgccuGCCAGa -3'
miRNA:   3'- -UGUAGUAGC-UCAACGCgGGCG--------UGGUC- -5'
12348 3' -55.2 NC_003324.1 + 23632 0.7 0.495148
Target:  5'- cCGUCGcCGAGc-GCGCCCGcCGCCAc -3'
miRNA:   3'- uGUAGUaGCUCaaCGCGGGC-GUGGUc -5'
12348 3' -55.2 NC_003324.1 + 31126 0.68 0.591641
Target:  5'- cGCGUCAgcagGAGUUGaaCGCcgaCCGCGCCGGu -3'
miRNA:   3'- -UGUAGUag--CUCAAC--GCG---GGCGUGGUC- -5'
12348 3' -55.2 NC_003324.1 + 26646 0.67 0.624707
Target:  5'- -gAUCucggCGAGgaugUGCGUCCGUACCuGa -3'
miRNA:   3'- ugUAGua--GCUCa---ACGCGGGCGUGGuC- -5'
12348 3' -55.2 NC_003324.1 + 39839 0.67 0.624707
Target:  5'- -gAUCAUCGAGcacgUGcCGCCgGaCACCAa -3'
miRNA:   3'- ugUAGUAGCUCa---AC-GCGGgC-GUGGUc -5'
12348 3' -55.2 NC_003324.1 + 26699 0.67 0.624707
Target:  5'- ---aUAUCGAGaaggGUGCCCGUACCu- -3'
miRNA:   3'- uguaGUAGCUCaa--CGCGGGCGUGGuc -5'
12348 3' -55.2 NC_003324.1 + 20830 0.67 0.635755
Target:  5'- cGCAUggccgaCAUCGAGaagcagGCGCCUGCGCUc- -3'
miRNA:   3'- -UGUA------GUAGCUCaa----CGCGGGCGUGGuc -5'
12348 3' -55.2 NC_003324.1 + 47778 0.66 0.688554
Target:  5'- cAUGUCGUCGAGgaggccgcgaagcGCGCCgacggaacuguccagCGCACCGGc -3'
miRNA:   3'- -UGUAGUAGCUCaa-----------CGCGG---------------GCGUGGUC- -5'
12348 3' -55.2 NC_003324.1 + 29569 0.66 0.690736
Target:  5'- -gGUUAcCGAGaUGCGCCCGacgcgcccgcaGCCAGg -3'
miRNA:   3'- ugUAGUaGCUCaACGCGGGCg----------UGGUC- -5'
12348 3' -55.2 NC_003324.1 + 32916 0.66 0.73376
Target:  5'- cGCGUCAguggcgaugaUCGAGgcgGCuGCCCGCcaugcGCCGa -3'
miRNA:   3'- -UGUAGU----------AGCUCaa-CG-CGGGCG-----UGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.