Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12349 | 3' | -57.3 | NC_003324.1 | + | 14989 | 0.66 | 0.638655 |
Target: 5'- --aCCuauGCGCAggacuuccaGCGcGAGACGGGCa -3' miRNA: 3'- guaGGu--CGCGUag-------CGC-CUCUGCUCGc -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 20611 | 0.66 | 0.638655 |
Target: 5'- --gCCGGCGCugaugggcgcUUGCGGucGGCGGGCa -3' miRNA: 3'- guaGGUCGCGu---------AGCGCCu-CUGCUCGc -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 44807 | 0.66 | 0.617028 |
Target: 5'- -cUCUGGCGCGUgGggaaCGGAGAagGAGCGc -3' miRNA: 3'- guAGGUCGCGUAgC----GCCUCUg-CUCGC- -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 17319 | 0.66 | 0.606229 |
Target: 5'- --gCCugcGCGUAUCuCGGAGACcuauGAGCGg -3' miRNA: 3'- guaGGu--CGCGUAGcGCCUCUG----CUCGC- -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 28851 | 0.66 | 0.595451 |
Target: 5'- aCAUCCAGaagaaGCugGUCGCGGucagAGAUgcgGAGCGc -3' miRNA: 3'- -GUAGGUCg----CG--UAGCGCC----UCUG---CUCGC- -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 23468 | 0.67 | 0.584704 |
Target: 5'- --gCCgAGCGCGUCaaaGCGGAGugGcgaaAGUGg -3' miRNA: 3'- guaGG-UCGCGUAG---CGCCUCugC----UCGC- -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 35472 | 0.67 | 0.573995 |
Target: 5'- --gUCGGCGag-CGUGGGGACG-GCGa -3' miRNA: 3'- guaGGUCGCguaGCGCCUCUGCuCGC- -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 10762 | 0.67 | 0.573995 |
Target: 5'- gAUCCuGCGCcauAUCGcCGGAGAa-AGCGc -3' miRNA: 3'- gUAGGuCGCG---UAGC-GCCUCUgcUCGC- -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 23752 | 0.67 | 0.563332 |
Target: 5'- --cCCGGCGCGcCGUGGAuaccGGCGaAGCa -3' miRNA: 3'- guaGGUCGCGUaGCGCCU----CUGC-UCGc -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 14090 | 0.67 | 0.552722 |
Target: 5'- ---gCAGCGCucaaggaaGCGGAGACcGGCGa -3' miRNA: 3'- guagGUCGCGuag-----CGCCUCUGcUCGC- -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 19100 | 0.67 | 0.552722 |
Target: 5'- --gCCuGCGCAUCGCGuucGAGGCcAGCc -3' miRNA: 3'- guaGGuCGCGUAGCGC---CUCUGcUCGc -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 16158 | 0.67 | 0.531692 |
Target: 5'- --gCCAG-GCAUCGCuggcaccGAGGCGGGCa -3' miRNA: 3'- guaGGUCgCGUAGCGc------CUCUGCUCGc -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 19317 | 0.67 | 0.531692 |
Target: 5'- cCAUgUAGCGC-UCGCGGAGccccuuauagaACG-GCGa -3' miRNA: 3'- -GUAgGUCGCGuAGCGCCUC-----------UGCuCGC- -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 34569 | 0.68 | 0.510958 |
Target: 5'- uCGUCuCAuGCGCcUUGCGGAGAUGcuucggguucAGCGg -3' miRNA: 3'- -GUAG-GU-CGCGuAGCGCCUCUGC----------UCGC- -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 48985 | 0.68 | 0.510958 |
Target: 5'- gAUCUuguGGCGgGUgGCGGAGuccuggauGCGGGCGa -3' miRNA: 3'- gUAGG---UCGCgUAgCGCCUC--------UGCUCGC- -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 25852 | 0.69 | 0.431859 |
Target: 5'- gAUgCGGCGCGUgGUGGAG-CGAucGCGa -3' miRNA: 3'- gUAgGUCGCGUAgCGCCUCuGCU--CGC- -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 20775 | 0.69 | 0.430915 |
Target: 5'- gGUCCGGCGCAacggagcUCGaaGAGACG-GCu -3' miRNA: 3'- gUAGGUCGCGU-------AGCgcCUCUGCuCGc -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 22705 | 0.74 | 0.225563 |
Target: 5'- cUAUgCAGCGCGUCGCGGGGcuCGGcaacGCGg -3' miRNA: 3'- -GUAgGUCGCGUAGCGCCUCu-GCU----CGC- -5' |
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12349 | 3' | -57.3 | NC_003324.1 | + | 23712 | 1.08 | 0.000877 |
Target: 5'- uCAUCCAGCGCAUCGCGGAGACGAGCGu -3' miRNA: 3'- -GUAGGUCGCGUAGCGCCUCUGCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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