miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12351 3' -56.9 NC_003324.1 + 47843 0.67 0.506118
Target:  5'- cAGGc--AGCCUcacgGcCCGGUGCCGAGAAu -3'
miRNA:   3'- uUCCauuUCGGG----C-GGUCACGGCUCUU- -5'
12351 3' -56.9 NC_003324.1 + 28970 0.71 0.303422
Target:  5'- gAAGGacGAGGCCgGCCAGUGgUGGGAc -3'
miRNA:   3'- -UUCCa-UUUCGGgCGGUCACgGCUCUu -5'
12351 3' -56.9 NC_003324.1 + 24134 1.04 0.001159
Target:  5'- gAAGGUAAAGCCCGCCAGUGCCGAGAAg -3'
miRNA:   3'- -UUCCAUUUCGGGCGGUCACGGCUCUU- -5'
12351 3' -56.9 NC_003324.1 + 56779 0.69 0.378288
Target:  5'- gGAGGUGGAGCCgGUaagcGUGCCgGAGGGu -3'
miRNA:   3'- -UUCCAUUUCGGgCGgu--CACGG-CUCUU- -5'
12351 3' -56.9 NC_003324.1 + 29706 0.66 0.560091
Target:  5'- -uGGUAGAGUUCGCCGGUaccGCUGucGAAa -3'
miRNA:   3'- uuCCAUUUCGGGCGGUCA---CGGCu-CUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.