miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12351 5' -58.9 NC_003324.1 + 23826 0.66 0.465178
Target:  5'- aUUUCC-GGCGCaACGUcGCAGCUCUu -3'
miRNA:   3'- aAGAGGuUCGCG-UGCGuCGUCGGGAu -5'
12351 5' -58.9 NC_003324.1 + 14329 0.66 0.455147
Target:  5'- cUUUUCguAGCGguCGCGGuCAGCCUUc -3'
miRNA:   3'- -AAGAGguUCGCguGCGUC-GUCGGGAu -5'
12351 5' -58.9 NC_003324.1 + 36633 0.66 0.435444
Target:  5'- gUCUCgAuGCGCAUGUAcGUcGCCCUAu -3'
miRNA:   3'- aAGAGgUuCGCGUGCGU-CGuCGGGAU- -5'
12351 5' -58.9 NC_003324.1 + 32226 0.66 0.435444
Target:  5'- -aUUCCAAGC-C-CGgGGCGGCCCg- -3'
miRNA:   3'- aaGAGGUUCGcGuGCgUCGUCGGGau -5'
12351 5' -58.9 NC_003324.1 + 38522 0.67 0.361876
Target:  5'- -aCUUCGAGUGCA-GCAGCgAGCCgUAu -3'
miRNA:   3'- aaGAGGUUCGCGUgCGUCG-UCGGgAU- -5'
12351 5' -58.9 NC_003324.1 + 44334 0.68 0.344884
Target:  5'- cUCUgCAgccacGGCGCGCGCuGC-GCCCUu -3'
miRNA:   3'- aAGAgGU-----UCGCGUGCGuCGuCGGGAu -5'
12351 5' -58.9 NC_003324.1 + 44195 0.68 0.335786
Target:  5'- -cCUCCAAGCGUucgAUGCGGUggaugaaGGCCUUGa -3'
miRNA:   3'- aaGAGGUUCGCG---UGCGUCG-------UCGGGAU- -5'
12351 5' -58.9 NC_003324.1 + 28165 0.69 0.297405
Target:  5'- -gCUCCGAGCGCAaagGCAcgAGCCCa- -3'
miRNA:   3'- aaGAGGUUCGCGUg--CGUcgUCGGGau -5'
12351 5' -58.9 NC_003324.1 + 31630 0.69 0.282746
Target:  5'- aUCgagaCCGcgGGCGCGCGUGGCGGCCa-- -3'
miRNA:   3'- aAGa---GGU--UCGCGUGCGUCGUCGGgau -5'
12351 5' -58.9 NC_003324.1 + 22300 0.69 0.282746
Target:  5'- -gCUCCcgaAGGUGCGCgGCGGCaAGCCCa- -3'
miRNA:   3'- aaGAGG---UUCGCGUG-CGUCG-UCGGGau -5'
12351 5' -58.9 NC_003324.1 + 48364 0.69 0.275634
Target:  5'- -aCUCCAAGCcgGCuuCGCAGUuGCCCUu -3'
miRNA:   3'- aaGAGGUUCG--CGu-GCGUCGuCGGGAu -5'
12351 5' -58.9 NC_003324.1 + 8280 0.69 0.273529
Target:  5'- gUCgaagugCCAGGCGCGCGCcgccgGGCagugagcagggacuGGCCCUGa -3'
miRNA:   3'- aAGa-----GGUUCGCGUGCG-----UCG--------------UCGGGAU- -5'
12351 5' -58.9 NC_003324.1 + 55136 0.7 0.255156
Target:  5'- -gCUUCu-GCGCcguCGCGGCAGCCCa- -3'
miRNA:   3'- aaGAGGuuCGCGu--GCGUCGUCGGGau -5'
12351 5' -58.9 NC_003324.1 + 46400 0.7 0.248613
Target:  5'- -cCUUgAGGCGCuuGCGGUAGUCCUGc -3'
miRNA:   3'- aaGAGgUUCGCGugCGUCGUCGGGAU- -5'
12351 5' -58.9 NC_003324.1 + 31204 0.7 0.235943
Target:  5'- ---gCCAGGCGCAagaacaaGCAGCAGCCg-- -3'
miRNA:   3'- aagaGGUUCGCGUg------CGUCGUCGGgau -5'
12351 5' -58.9 NC_003324.1 + 4565 0.7 0.235943
Target:  5'- ---aUCGAGCGCGCGCAGguccaGGCCCg- -3'
miRNA:   3'- aagaGGUUCGCGUGCGUCg----UCGGGau -5'
12351 5' -58.9 NC_003324.1 + 24098 1.04 0.000731
Target:  5'- cUUCUCCAAGCGCACGCAGCAGCCCUAc -3'
miRNA:   3'- -AAGAGGUUCGCGUGCGUCGUCGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.