Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12352 | 3' | -52.5 | NC_003324.1 | + | 28989 | 0.66 | 0.887861 |
Target: 5'- aGCCGGAAucgGUCGcagcgaaGGaCGAGgCCGg -3' miRNA: 3'- -CGGCCUUuuaCAGUa------CCaGCUCgGGC- -5' |
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12352 | 3' | -52.5 | NC_003324.1 | + | 21705 | 0.66 | 0.880318 |
Target: 5'- uUCGGAAAG-GUCAgguccGGaCGGGUCCGg -3' miRNA: 3'- cGGCCUUUUaCAGUa----CCaGCUCGGGC- -5' |
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12352 | 3' | -52.5 | NC_003324.1 | + | 56799 | 0.66 | 0.872514 |
Target: 5'- uGCCGGAGGGUGUCGaGcUUGccGCUCGg -3' miRNA: 3'- -CGGCCUUUUACAGUaCcAGCu-CGGGC- -5' |
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12352 | 3' | -52.5 | NC_003324.1 | + | 37353 | 0.66 | 0.872514 |
Target: 5'- cUCGGcGAuUGUCGUacugccGGUCGAGCUCu -3' miRNA: 3'- cGGCCuUUuACAGUA------CCAGCUCGGGc -5' |
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12352 | 3' | -52.5 | NC_003324.1 | + | 4849 | 0.68 | 0.779883 |
Target: 5'- cGCCGGcaacaacguUG-CGgccGGUCGAGCCCu -3' miRNA: 3'- -CGGCCuuuu-----ACaGUa--CCAGCUCGGGc -5' |
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12352 | 3' | -52.5 | NC_003324.1 | + | 36026 | 0.68 | 0.779883 |
Target: 5'- aCCGGAGuAUGUCGcGGUCaacgacgggcuGCCCGa -3' miRNA: 3'- cGGCCUUuUACAGUaCCAGcu---------CGGGC- -5' |
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12352 | 3' | -52.5 | NC_003324.1 | + | 10255 | 0.7 | 0.668974 |
Target: 5'- uGCCGGAAGGUccggacaaagcuguaGcCAUGGUCGAGUg-- -3' miRNA: 3'- -CGGCCUUUUA---------------CaGUACCAGCUCGggc -5' |
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12352 | 3' | -52.5 | NC_003324.1 | + | 24593 | 1.12 | 0.001377 |
Target: 5'- uGCCGGAAAAUGUCAUGGUCGAGCCCGg -3' miRNA: 3'- -CGGCCUUUUACAGUACCAGCUCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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