miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12353 5' -55 NC_003324.1 + 49704 0.66 0.724542
Target:  5'- uGCGAUCguuggCGCCUGCCaGAaugACGGUaucGCCa- -3'
miRNA:   3'- -CGCUAG-----GCGGACGG-CU---UGUUA---CGGaa -5'
12353 5' -55 NC_003324.1 + 49202 0.66 0.724542
Target:  5'- uCGAUCUuCCUGCCG-ACGAUccgaacGCCUg -3'
miRNA:   3'- cGCUAGGcGGACGGCuUGUUA------CGGAa -5'
12353 5' -55 NC_003324.1 + 42169 0.66 0.702868
Target:  5'- cGCGAUCguaCUUGCCGAACGAcgGCaCUg -3'
miRNA:   3'- -CGCUAGgc-GGACGGCUUGUUa-CG-GAa -5'
12353 5' -55 NC_003324.1 + 14572 0.66 0.702868
Target:  5'- -gGGUCgCgGCCUGCCGGcGCAAgcgGCCg- -3'
miRNA:   3'- cgCUAG-G-CGGACGGCU-UGUUa--CGGaa -5'
12353 5' -55 NC_003324.1 + 4993 0.66 0.679808
Target:  5'- aGCGGaagCCGCCUGCgGAgccgaaaGCGAUaacGCCa- -3'
miRNA:   3'- -CGCUa--GGCGGACGgCU-------UGUUA---CGGaa -5'
12353 5' -55 NC_003324.1 + 41192 0.66 0.679808
Target:  5'- -aGGUCCGCUUGCCagcggauGGACA-UGCUUUc -3'
miRNA:   3'- cgCUAGGCGGACGG-------CUUGUuACGGAA- -5'
12353 5' -55 NC_003324.1 + 5537 0.67 0.66764
Target:  5'- gGCGAcgCCGCCUGCCuacccagcguCGAUGCg-- -3'
miRNA:   3'- -CGCUa-GGCGGACGGcuu-------GUUACGgaa -5'
12353 5' -55 NC_003324.1 + 35547 0.67 0.647648
Target:  5'- uGUGAUCUGCgaGCgGAucuGCAagGCCUg -3'
miRNA:   3'- -CGCUAGGCGgaCGgCU---UGUuaCGGAa -5'
12353 5' -55 NC_003324.1 + 30286 0.67 0.636516
Target:  5'- aCGGUCgcccaaGCC-GCCGAAC-AUGCCUg -3'
miRNA:   3'- cGCUAGg-----CGGaCGGCUUGuUACGGAa -5'
12353 5' -55 NC_003324.1 + 50918 0.67 0.636516
Target:  5'- gGCGAaCCGCCUGCa--GCGAUGUg-- -3'
miRNA:   3'- -CGCUaGGCGGACGgcuUGUUACGgaa -5'
12353 5' -55 NC_003324.1 + 17168 0.67 0.629834
Target:  5'- aGCGAUUgacgaggcgcuggcgCGUCUGUCGGACGcgGCUUUc -3'
miRNA:   3'- -CGCUAG---------------GCGGACGGCUUGUuaCGGAA- -5'
12353 5' -55 NC_003324.1 + 43100 0.67 0.62538
Target:  5'- cGCcAUCCGCCaGCgGGcAUAAUGCCa- -3'
miRNA:   3'- -CGcUAGGCGGaCGgCU-UGUUACGGaa -5'
12353 5' -55 NC_003324.1 + 28640 0.68 0.603137
Target:  5'- uGCGggCCGCCuUGUCGcGCGucgugGUGCCa- -3'
miRNA:   3'- -CGCuaGGCGG-ACGGCuUGU-----UACGGaa -5'
12353 5' -55 NC_003324.1 + 40154 0.68 0.596481
Target:  5'- gGCGAuguccuugUCCGacaCCUucgacaggaacaucaGCCGAGCGAUGCCg- -3'
miRNA:   3'- -CGCU--------AGGC---GGA---------------CGGCUUGUUACGGaa -5'
12353 5' -55 NC_003324.1 + 1585 0.68 0.580996
Target:  5'- -gGAUCCucgcugGCCcgGCCGGaaGCAAUGCCa- -3'
miRNA:   3'- cgCUAGG------CGGa-CGGCU--UGUUACGGaa -5'
12353 5' -55 NC_003324.1 + 42300 0.69 0.537299
Target:  5'- aGUGcgCCGCCUGCC--ACG-UGCCg- -3'
miRNA:   3'- -CGCuaGGCGGACGGcuUGUuACGGaa -5'
12353 5' -55 NC_003324.1 + 16248 0.73 0.303426
Target:  5'- uGCGGUgcCCGCCucggUGCC-AGCGAUGCCUg -3'
miRNA:   3'- -CGCUA--GGCGG----ACGGcUUGUUACGGAa -5'
12353 5' -55 NC_003324.1 + 4378 0.74 0.260313
Target:  5'- cGCGGUgCGCUUGCgGGACAucuUGCCa- -3'
miRNA:   3'- -CGCUAgGCGGACGgCUUGUu--ACGGaa -5'
12353 5' -55 NC_003324.1 + 24895 1.07 0.001296
Target:  5'- cGCGAUCCGCCUGCCGAACAAUGCCUUc -3'
miRNA:   3'- -CGCUAGGCGGACGGCUUGUUACGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.