Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12354 | 3' | -58.3 | NC_003324.1 | + | 16313 | 0.69 | 0.40123 |
Target: 5'- uGcgCUGGCcgcGUCGGCAcgGCCUGCCc- -3' miRNA: 3'- gCuaGACCGc--UAGCCGU--UGGGCGGca -5' |
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12354 | 3' | -58.3 | NC_003324.1 | + | 16261 | 0.67 | 0.486508 |
Target: 5'- --uUCUGGCGGgagcugCGGU-GCCCGCCu- -3' miRNA: 3'- gcuAGACCGCUa-----GCCGuUGGGCGGca -5' |
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12354 | 3' | -58.3 | NC_003324.1 | + | 15923 | 0.68 | 0.457069 |
Target: 5'- gGAUUgagaaaagUGGCGAuagucuUCGGCAGCUCgGCCGc -3' miRNA: 3'- gCUAG--------ACCGCU------AGCCGUUGGG-CGGCa -5' |
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12354 | 3' | -58.3 | NC_003324.1 | + | 13625 | 0.67 | 0.486508 |
Target: 5'- aCGcgCaGGCGAUCGGCA-UCCGauCCGa -3' miRNA: 3'- -GCuaGaCCGCUAGCCGUuGGGC--GGCa -5' |
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12354 | 3' | -58.3 | NC_003324.1 | + | 13156 | 0.66 | 0.600732 |
Target: 5'- gCGGUC-GGCGG-CGGCGguACCgGCUGc -3' miRNA: 3'- -GCUAGaCCGCUaGCCGU--UGGgCGGCa -5' |
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12354 | 3' | -58.3 | NC_003324.1 | + | 13002 | 0.71 | 0.310125 |
Target: 5'- gCGG-CUGGCGAUCuGCAgggcggcaucaacGCCCGCCc- -3' miRNA: 3'- -GCUaGACCGCUAGcCGU-------------UGGGCGGca -5' |
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12354 | 3' | -58.3 | NC_003324.1 | + | 5937 | 0.67 | 0.495514 |
Target: 5'- uCGcugCUGGCuAUCaGGCAgcgaacuACCCGCCGa -3' miRNA: 3'- -GCua-GACCGcUAG-CCGU-------UGGGCGGCa -5' |
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12354 | 3' | -58.3 | NC_003324.1 | + | 5460 | 0.67 | 0.506624 |
Target: 5'- gGGUCaGGCaggCGGCGucGCCCGCCc- -3' miRNA: 3'- gCUAGaCCGcuaGCCGU--UGGGCGGca -5' |
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12354 | 3' | -58.3 | NC_003324.1 | + | 4831 | 0.68 | 0.457069 |
Target: 5'- uGAagaUGGCGuugcuUCGGCcuUCCGCCGUa -3' miRNA: 3'- gCUag-ACCGCu----AGCCGuuGGGCGGCA- -5' |
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12354 | 3' | -58.3 | NC_003324.1 | + | 713 | 0.67 | 0.537434 |
Target: 5'- aCGcgCUGGUGAaUGGCaAGCCCaGCUGc -3' miRNA: 3'- -GCuaGACCGCUaGCCG-UUGGG-CGGCa -5' |
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12354 | 3' | -58.3 | NC_003324.1 | + | 502 | 0.66 | 0.558329 |
Target: 5'- aGGUgaUGGCGAucaccaaggUCGGCAGCUCGaCCa- -3' miRNA: 3'- gCUAg-ACCGCU---------AGCCGUUGGGC-GGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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