miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12356 5' -50.9 NC_003324.1 + 3366 0.66 0.908098
Target:  5'- -uUUGAcaUGUuuaUGCCGACGgUUGCCGcCGc -3'
miRNA:   3'- uuAACU--ACA---GCGGCUGU-AACGGCaGC- -5'
12356 5' -50.9 NC_003324.1 + 32385 0.66 0.893945
Target:  5'- ---aGAUGcggCGCCGcGCAgagGCCGUUGu -3'
miRNA:   3'- uuaaCUACa--GCGGC-UGUaa-CGGCAGC- -5'
12356 5' -50.9 NC_003324.1 + 20619 0.67 0.853713
Target:  5'- ---cGAcUGUUGCCGGCGcugaugggcgcUUGCgGUCGg -3'
miRNA:   3'- uuaaCU-ACAGCGGCUGU-----------AACGgCAGC- -5'
12356 5' -50.9 NC_003324.1 + 1395 0.68 0.826537
Target:  5'- ---cGAUG-CGCCGACggUGCUGggCGu -3'
miRNA:   3'- uuaaCUACaGCGGCUGuaACGGCa-GC- -5'
12356 5' -50.9 NC_003324.1 + 34430 0.68 0.80731
Target:  5'- --gUGAUGUCgGCCGACGgcacauugGCaagCGUCGg -3'
miRNA:   3'- uuaACUACAG-CGGCUGUaa------CG---GCAGC- -5'
12356 5' -50.9 NC_003324.1 + 23720 0.68 0.80731
Target:  5'- ---cGAUGUcCGCCGGC--UGCaCGUCa -3'
miRNA:   3'- uuaaCUACA-GCGGCUGuaACG-GCAGc -5'
12356 5' -50.9 NC_003324.1 + 36415 0.69 0.797396
Target:  5'- ---gGAUGUCGCgGAUGUUGCgGaUCa -3'
miRNA:   3'- uuaaCUACAGCGgCUGUAACGgC-AGc -5'
12356 5' -50.9 NC_003324.1 + 53243 0.69 0.797396
Target:  5'- uGUUGAUGUUGUaguaGACcgUGCC-UCGg -3'
miRNA:   3'- uUAACUACAGCGg---CUGuaACGGcAGC- -5'
12356 5' -50.9 NC_003324.1 + 4215 0.69 0.797396
Target:  5'- --aUGGUGUCGCCGGCuu--CCGauUCGa -3'
miRNA:   3'- uuaACUACAGCGGCUGuaacGGC--AGC- -5'
12356 5' -50.9 NC_003324.1 + 6568 0.69 0.770785
Target:  5'- aGAUUGcgGUuaaUGCCGAUGagcugcaguguugccUUGCCGUCGa -3'
miRNA:   3'- -UUAACuaCA---GCGGCUGU---------------AACGGCAGC- -5'
12356 5' -50.9 NC_003324.1 + 20369 0.69 0.766594
Target:  5'- ---cGGUGcucuugcuaUCGCCGGCcgUGCCGUa- -3'
miRNA:   3'- uuaaCUAC---------AGCGGCUGuaACGGCAgc -5'
12356 5' -50.9 NC_003324.1 + 1193 0.7 0.727907
Target:  5'- ---gGAUaGUUGCCGAUGacaagcgucuucuccUUGCCGUCGa -3'
miRNA:   3'- uuaaCUA-CAGCGGCUGU---------------AACGGCAGC- -5'
12356 5' -50.9 NC_003324.1 + 21601 0.71 0.656228
Target:  5'- ---cGAUG-CGCCGugGcgGCCGUCc -3'
miRNA:   3'- uuaaCUACaGCGGCugUaaCGGCAGc -5'
12356 5' -50.9 NC_003324.1 + 31881 0.71 0.656228
Target:  5'- -cUUGGc-UCGCCGACGUUGCCGa-- -3'
miRNA:   3'- uuAACUacAGCGGCUGUAACGGCagc -5'
12356 5' -50.9 NC_003324.1 + 16332 0.72 0.599375
Target:  5'- ---aGcgGUcCGCgaCGGCGUUGCCGUCGa -3'
miRNA:   3'- uuaaCuaCA-GCG--GCUGUAACGGCAGC- -5'
12356 5' -50.9 NC_003324.1 + 9580 0.73 0.565536
Target:  5'- uGUUGGUGcCGCCGGCcgUGCCa--- -3'
miRNA:   3'- uUAACUACaGCGGCUGuaACGGcagc -5'
12356 5' -50.9 NC_003324.1 + 50868 0.73 0.554359
Target:  5'- ---cGGUGUgGCa-GCAUUGCCGUCGc -3'
miRNA:   3'- uuaaCUACAgCGgcUGUAACGGCAGC- -5'
12356 5' -50.9 NC_003324.1 + 34899 0.75 0.43734
Target:  5'- cGUUGAUGUCgGCCGGCAggauccacgUUGCCGgCGc -3'
miRNA:   3'- uUAACUACAG-CGGCUGU---------AACGGCaGC- -5'
12356 5' -50.9 NC_003324.1 + 26538 1.08 0.003481
Target:  5'- cAAUUGAUGUCGCCGACAUUGCCGUCGa -3'
miRNA:   3'- -UUAACUACAGCGGCUGUAACGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.