miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12359 5' -55.3 NC_003324.1 + 28387 0.68 0.629832
Target:  5'- -uCCAACGgauacCGCCcaacAGCGGGCUCGgcauGGAu -3'
miRNA:   3'- ccGGUUGCa----GCGG----UUGCCCGAGU----UCU- -5'
12359 5' -55.3 NC_003324.1 + 28432 0.68 0.629832
Target:  5'- aGGCCGACGaUGUUc-CGGGCUaCGAGGc -3'
miRNA:   3'- -CCGGUUGCaGCGGuuGCCCGA-GUUCU- -5'
12359 5' -55.3 NC_003324.1 + 31315 0.69 0.532549
Target:  5'- cGGCCGGCGgcgcuggCGCUGGCGGGggCAu-- -3'
miRNA:   3'- -CCGGUUGCa------GCGGUUGCCCgaGUucu -5'
12359 5' -55.3 NC_003324.1 + 31874 0.78 0.15798
Target:  5'- cGCCGACGUUGCCGaauACGGGCcCgAAGAg -3'
miRNA:   3'- cCGGUUGCAGCGGU---UGCCCGaG-UUCU- -5'
12359 5' -55.3 NC_003324.1 + 32102 0.66 0.705874
Target:  5'- cGGCU--CGUCGCCggUGaGGC-CGAGu -3'
miRNA:   3'- -CCGGuuGCAGCGGuuGC-CCGaGUUCu -5'
12359 5' -55.3 NC_003324.1 + 32367 0.7 0.490938
Target:  5'- aGGCCGuUGUCGCCAGCGuGUUCucuGGc -3'
miRNA:   3'- -CCGGUuGCAGCGGUUGCcCGAGuu-CU- -5'
12359 5' -55.3 NC_003324.1 + 32522 0.68 0.586194
Target:  5'- uGGCUGcCGUUGCCAGCGucaUCAAGAa -3'
miRNA:   3'- -CCGGUuGCAGCGGUUGCccgAGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 33519 0.67 0.662612
Target:  5'- cGGCgAGCGUuacacggacaaCGCCGAUGaagcGGCUCGGGc -3'
miRNA:   3'- -CCGgUUGCA-----------GCGGUUGC----CCGAGUUCu -5'
12359 5' -55.3 NC_003324.1 + 34023 0.66 0.758263
Target:  5'- gGGCCGAUGcagaaggcgaGCCAugGGGUgu-AGAa -3'
miRNA:   3'- -CCGGUUGCag--------CGGUugCCCGaguUCU- -5'
12359 5' -55.3 NC_003324.1 + 34274 0.71 0.44117
Target:  5'- gGGCCGAUG-CGUCAGCcucGGCUuCGAGAc -3'
miRNA:   3'- -CCGGUUGCaGCGGUUGc--CCGA-GUUCU- -5'
12359 5' -55.3 NC_003324.1 + 36032 0.66 0.704804
Target:  5'- cGGCaCAccggaguAUGUCGCggucaaCGACGGGCUgccCGAGAa -3'
miRNA:   3'- -CCG-GU-------UGCAGCG------GUUGCCCGA---GUUCU- -5'
12359 5' -55.3 NC_003324.1 + 36835 0.66 0.716539
Target:  5'- cGGCCAGCG-CuCC-ACGGGcCUCGcaucGGAu -3'
miRNA:   3'- -CCGGUUGCaGcGGuUGCCC-GAGU----UCU- -5'
12359 5' -55.3 NC_003324.1 + 38162 0.66 0.727122
Target:  5'- cGCCGACGcgcuUCGCCAGaaGGCgcaguaccgCGAGGa -3'
miRNA:   3'- cCGGUUGC----AGCGGUUgcCCGa--------GUUCU- -5'
12359 5' -55.3 NC_003324.1 + 38704 0.67 0.662612
Target:  5'- cGGCaaa-GUCGCUccGACGGG-UCGAGAc -3'
miRNA:   3'- -CCGguugCAGCGG--UUGCCCgAGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 43084 0.66 0.741777
Target:  5'- cGGCCGGuucucCGUUGCCGacccgcgugaauuugGCGGGUU-GAGAa -3'
miRNA:   3'- -CCGGUU-----GCAGCGGU---------------UGCCCGAgUUCU- -5'
12359 5' -55.3 NC_003324.1 + 43643 0.67 0.677839
Target:  5'- cGGCUGACGUUGCgCGGCGuguGGCugaugcuggaagccuUCAAGGa -3'
miRNA:   3'- -CCGGUUGCAGCG-GUUGC---CCG---------------AGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 48728 0.68 0.597068
Target:  5'- cGCCAaccGCGUcggCGCCAGCaGGCUgCAGGc -3'
miRNA:   3'- cCGGU---UGCA---GCGGUUGcCCGA-GUUCu -5'
12359 5' -55.3 NC_003324.1 + 49501 0.67 0.662612
Target:  5'- aGCCAaGCGcCGCUGcCGGGCUCGc-- -3'
miRNA:   3'- cCGGU-UGCaGCGGUuGCCCGAGUucu -5'
12359 5' -55.3 NC_003324.1 + 50669 0.67 0.673496
Target:  5'- aGGgCGGCGU-GCCAGCccuuuuccgucGGCUCAAGGa -3'
miRNA:   3'- -CCgGUUGCAgCGGUUGc----------CCGAGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 51725 0.73 0.326556
Target:  5'- aGGCCGACGcaaUCGCCGA-GGGCgcCAAGc -3'
miRNA:   3'- -CCGGUUGC---AGCGGUUgCCCGa-GUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.