Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12360 | 3' | -54.3 | NC_003324.1 | + | 31324 | 0.66 | 0.756318 |
Target: 5'- cGCGCA--GUGc-GGCCGGCgGCGCUg -3' miRNA: 3'- -CGUGUucCAUuaCCGGCCGaUGCGGu -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 44210 | 0.66 | 0.735244 |
Target: 5'- -gGCGAGGcaaaggGGaCCGGCUucgAUGCCAa -3' miRNA: 3'- cgUGUUCCauua--CC-GGCCGA---UGCGGU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 42911 | 0.67 | 0.713747 |
Target: 5'- aGCGCGGGGcGAccauUGGCgGucaCUGCGCCGg -3' miRNA: 3'- -CGUGUUCCaUU----ACCGgCc--GAUGCGGU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 41712 | 0.67 | 0.702868 |
Target: 5'- cCGCAAGGUAAgaggGGUCG-CUccaugcgaucACGCCAc -3' miRNA: 3'- cGUGUUCCAUUa---CCGGCcGA----------UGCGGU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 4250 | 0.67 | 0.702868 |
Target: 5'- -gACGAGGUGAaGGUCGaucagaUGCGCCAc -3' miRNA: 3'- cgUGUUCCAUUaCCGGCcg----AUGCGGU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 54246 | 0.67 | 0.702868 |
Target: 5'- gGCGCGGcaccGGUugccAUGGaCCGGCaucaGCGCCGa -3' miRNA: 3'- -CGUGUU----CCAu---UACC-GGCCGa---UGCGGU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 44902 | 0.67 | 0.678704 |
Target: 5'- gGCGCGGGGgcuggauugcucGAUGGCaaGCUGCGCg- -3' miRNA: 3'- -CGUGUUCCa-----------UUACCGgcCGAUGCGgu -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 31224 | 0.67 | 0.669856 |
Target: 5'- cCGCGAGGca--GGCCuGCaGCGCCAg -3' miRNA: 3'- cGUGUUCCauuaCCGGcCGaUGCGGU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 27349 | 0.68 | 0.658765 |
Target: 5'- -gAUAGGGUuGUGGCCGucGCUGCGgUAc -3' miRNA: 3'- cgUGUUCCAuUACCGGC--CGAUGCgGU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 21928 | 0.68 | 0.647648 |
Target: 5'- cGC-CGAGGa---GGcCCGGCUGCGCgAa -3' miRNA: 3'- -CGuGUUCCauuaCC-GGCCGAUGCGgU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 14587 | 0.68 | 0.636516 |
Target: 5'- gGCGCAAGc----GGCCGGCgGCGCa- -3' miRNA: 3'- -CGUGUUCcauuaCCGGCCGaUGCGgu -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 19409 | 0.68 | 0.636516 |
Target: 5'- uGCAUGAGGUc--GGCUagauGCUGCGCCu -3' miRNA: 3'- -CGUGUUCCAuuaCCGGc---CGAUGCGGu -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 43790 | 0.68 | 0.636516 |
Target: 5'- -aGCAGGGU----GCCGGgaACGCCGg -3' miRNA: 3'- cgUGUUCCAuuacCGGCCgaUGCGGU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 30461 | 0.68 | 0.614251 |
Target: 5'- uGguCGAGGgcggcAUGGCCgagGGCgACGCCAu -3' miRNA: 3'- -CguGUUCCau---UACCGG---CCGaUGCGGU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 16545 | 0.7 | 0.537299 |
Target: 5'- gGCGagAGGGUGAggGGCUGGCUGCucaucgucucGCCGu -3' miRNA: 3'- -CGUg-UUCCAUUa-CCGGCCGAUG----------CGGU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 20210 | 0.7 | 0.515869 |
Target: 5'- cGCGCccGGU-AUGGCCGGCaGC-CCAg -3' miRNA: 3'- -CGUGuuCCAuUACCGGCCGaUGcGGU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 9869 | 0.7 | 0.515869 |
Target: 5'- -gGCGGGGU-GUGGCggauacgaGGUUACGCCGg -3' miRNA: 3'- cgUGUUCCAuUACCGg-------CCGAUGCGGU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 40066 | 0.7 | 0.505283 |
Target: 5'- uGCGC-GGGUc-UGGCCGGaacgcgGCGCCGa -3' miRNA: 3'- -CGUGuUCCAuuACCGGCCga----UGCGGU- -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 42274 | 0.7 | 0.505283 |
Target: 5'- cUACAGGGcGcgGGUCGGCaACGCUg -3' miRNA: 3'- cGUGUUCCaUuaCCGGCCGaUGCGGu -5' |
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12360 | 3' | -54.3 | NC_003324.1 | + | 18802 | 0.71 | 0.463941 |
Target: 5'- uGCGC-GGGUccAUGGCgCGGCgaaggucgGCGCCAg -3' miRNA: 3'- -CGUGuUCCAu-UACCG-GCCGa-------UGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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