miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12360 3' -54.3 NC_003324.1 + 31324 0.66 0.756318
Target:  5'- cGCGCA--GUGc-GGCCGGCgGCGCUg -3'
miRNA:   3'- -CGUGUucCAUuaCCGGCCGaUGCGGu -5'
12360 3' -54.3 NC_003324.1 + 44210 0.66 0.735244
Target:  5'- -gGCGAGGcaaaggGGaCCGGCUucgAUGCCAa -3'
miRNA:   3'- cgUGUUCCauua--CC-GGCCGA---UGCGGU- -5'
12360 3' -54.3 NC_003324.1 + 42911 0.67 0.713747
Target:  5'- aGCGCGGGGcGAccauUGGCgGucaCUGCGCCGg -3'
miRNA:   3'- -CGUGUUCCaUU----ACCGgCc--GAUGCGGU- -5'
12360 3' -54.3 NC_003324.1 + 4250 0.67 0.702868
Target:  5'- -gACGAGGUGAaGGUCGaucagaUGCGCCAc -3'
miRNA:   3'- cgUGUUCCAUUaCCGGCcg----AUGCGGU- -5'
12360 3' -54.3 NC_003324.1 + 54246 0.67 0.702868
Target:  5'- gGCGCGGcaccGGUugccAUGGaCCGGCaucaGCGCCGa -3'
miRNA:   3'- -CGUGUU----CCAu---UACC-GGCCGa---UGCGGU- -5'
12360 3' -54.3 NC_003324.1 + 41712 0.67 0.702868
Target:  5'- cCGCAAGGUAAgaggGGUCG-CUccaugcgaucACGCCAc -3'
miRNA:   3'- cGUGUUCCAUUa---CCGGCcGA----------UGCGGU- -5'
12360 3' -54.3 NC_003324.1 + 44902 0.67 0.678704
Target:  5'- gGCGCGGGGgcuggauugcucGAUGGCaaGCUGCGCg- -3'
miRNA:   3'- -CGUGUUCCa-----------UUACCGgcCGAUGCGgu -5'
12360 3' -54.3 NC_003324.1 + 31224 0.67 0.669856
Target:  5'- cCGCGAGGca--GGCCuGCaGCGCCAg -3'
miRNA:   3'- cGUGUUCCauuaCCGGcCGaUGCGGU- -5'
12360 3' -54.3 NC_003324.1 + 27349 0.68 0.658765
Target:  5'- -gAUAGGGUuGUGGCCGucGCUGCGgUAc -3'
miRNA:   3'- cgUGUUCCAuUACCGGC--CGAUGCgGU- -5'
12360 3' -54.3 NC_003324.1 + 21928 0.68 0.647648
Target:  5'- cGC-CGAGGa---GGcCCGGCUGCGCgAa -3'
miRNA:   3'- -CGuGUUCCauuaCC-GGCCGAUGCGgU- -5'
12360 3' -54.3 NC_003324.1 + 14587 0.68 0.636516
Target:  5'- gGCGCAAGc----GGCCGGCgGCGCa- -3'
miRNA:   3'- -CGUGUUCcauuaCCGGCCGaUGCGgu -5'
12360 3' -54.3 NC_003324.1 + 19409 0.68 0.636516
Target:  5'- uGCAUGAGGUc--GGCUagauGCUGCGCCu -3'
miRNA:   3'- -CGUGUUCCAuuaCCGGc---CGAUGCGGu -5'
12360 3' -54.3 NC_003324.1 + 43790 0.68 0.636516
Target:  5'- -aGCAGGGU----GCCGGgaACGCCGg -3'
miRNA:   3'- cgUGUUCCAuuacCGGCCgaUGCGGU- -5'
12360 3' -54.3 NC_003324.1 + 30461 0.68 0.614251
Target:  5'- uGguCGAGGgcggcAUGGCCgagGGCgACGCCAu -3'
miRNA:   3'- -CguGUUCCau---UACCGG---CCGaUGCGGU- -5'
12360 3' -54.3 NC_003324.1 + 16545 0.7 0.537299
Target:  5'- gGCGagAGGGUGAggGGCUGGCUGCucaucgucucGCCGu -3'
miRNA:   3'- -CGUg-UUCCAUUa-CCGGCCGAUG----------CGGU- -5'
12360 3' -54.3 NC_003324.1 + 20210 0.7 0.515869
Target:  5'- cGCGCccGGU-AUGGCCGGCaGC-CCAg -3'
miRNA:   3'- -CGUGuuCCAuUACCGGCCGaUGcGGU- -5'
12360 3' -54.3 NC_003324.1 + 9869 0.7 0.515869
Target:  5'- -gGCGGGGU-GUGGCggauacgaGGUUACGCCGg -3'
miRNA:   3'- cgUGUUCCAuUACCGg-------CCGAUGCGGU- -5'
12360 3' -54.3 NC_003324.1 + 40066 0.7 0.505283
Target:  5'- uGCGC-GGGUc-UGGCCGGaacgcgGCGCCGa -3'
miRNA:   3'- -CGUGuUCCAuuACCGGCCga----UGCGGU- -5'
12360 3' -54.3 NC_003324.1 + 42274 0.7 0.505283
Target:  5'- cUACAGGGcGcgGGUCGGCaACGCUg -3'
miRNA:   3'- cGUGUUCCaUuaCCGGCCGaUGCGGu -5'
12360 3' -54.3 NC_003324.1 + 18802 0.71 0.463941
Target:  5'- uGCGC-GGGUccAUGGCgCGGCgaaggucgGCGCCAg -3'
miRNA:   3'- -CGUGuUCCAu-UACCG-GCCGa-------UGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.