miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12361 3' -58 NC_003324.1 + 5506 0.66 0.586623
Target:  5'- cGGAGAaGaacUCGGCGCCGcAgGUGCGGg -3'
miRNA:   3'- -CCUCUaCa--GGCCGCGGCuUgCGCGUU- -5'
12361 3' -58 NC_003324.1 + 57035 0.66 0.575914
Target:  5'- uGGGGAg---CGGCGgCGAGgGCGCGGa -3'
miRNA:   3'- -CCUCUacagGCCGCgGCUUgCGCGUU- -5'
12361 3' -58 NC_003324.1 + 48693 0.66 0.575914
Target:  5'- -cGGAUG-CgGGCGCCGAccuGCGUGuCGAu -3'
miRNA:   3'- ccUCUACaGgCCGCGGCU---UGCGC-GUU- -5'
12361 3' -58 NC_003324.1 + 26411 0.66 0.575914
Target:  5'- cGGGAUGcucgaaCCGGCGCUGAAagaaGcCGCGGa -3'
miRNA:   3'- cCUCUACa-----GGCCGCGGCUUg---C-GCGUU- -5'
12361 3' -58 NC_003324.1 + 20631 0.66 0.565249
Target:  5'- aGAGAcccgauccgacUGUugCCGGCGCUGAugGgCGCu- -3'
miRNA:   3'- cCUCU-----------ACA--GGCCGCGGCUugC-GCGuu -5'
12361 3' -58 NC_003324.1 + 18899 0.66 0.554637
Target:  5'- uGGAGA---CUGGCGCCGAccuucgcCGCGCc- -3'
miRNA:   3'- -CCUCUacaGGCCGCGGCUu------GCGCGuu -5'
12361 3' -58 NC_003324.1 + 20956 0.66 0.544084
Target:  5'- ----cUGUCCGGCGCCcguGAuuaucACGUGCAc -3'
miRNA:   3'- ccucuACAGGCCGCGG---CU-----UGCGCGUu -5'
12361 3' -58 NC_003324.1 + 39985 0.67 0.502599
Target:  5'- -----aGUCCGucGCGCCGAGCGUgGCGAg -3'
miRNA:   3'- ccucuaCAGGC--CGCGGCUUGCG-CGUU- -5'
12361 3' -58 NC_003324.1 + 23374 0.67 0.502599
Target:  5'- -cGGAUGUCCuGCGCagcuauGAcgGCGCGCAu -3'
miRNA:   3'- ccUCUACAGGcCGCGg-----CU--UGCGCGUu -5'
12361 3' -58 NC_003324.1 + 17551 0.68 0.443168
Target:  5'- cGGAaccaaagGUCCGGCauGCCGA-UGCGCGAc -3'
miRNA:   3'- -CCUcua----CAGGCCG--CGGCUuGCGCGUU- -5'
12361 3' -58 NC_003324.1 + 45847 0.68 0.452804
Target:  5'- uGAGGUGgaaaCGGCGCgGGGCGCcugauGCGAg -3'
miRNA:   3'- cCUCUACag--GCCGCGgCUUGCG-----CGUU- -5'
12361 3' -58 NC_003324.1 + 32809 0.68 0.452804
Target:  5'- cGAGcUGUUCGGCGCauGGCGgGCAGc -3'
miRNA:   3'- cCUCuACAGGCCGCGgcUUGCgCGUU- -5'
12361 3' -58 NC_003324.1 + 38005 0.7 0.362023
Target:  5'- cGGAGcgGUUgCGGCGCacgGGGCGCGuCAAc -3'
miRNA:   3'- -CCUCuaCAG-GCCGCGg--CUUGCGC-GUU- -5'
12361 3' -58 NC_003324.1 + 23640 0.74 0.183981
Target:  5'- -uGGAUGUaCCGuCGCCGAGCGCGCc- -3'
miRNA:   3'- ccUCUACA-GGCcGCGGCUUGCGCGuu -5'
12361 3' -58 NC_003324.1 + 28372 1.08 0.000623
Target:  5'- cGGAGAUGUCCGGCGCCGAACGCGCAAg -3'
miRNA:   3'- -CCUCUACAGGCCGCGGCUUGCGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.