miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12362 5' -55.6 NC_003324.1 + 51005 0.67 0.599938
Target:  5'- cGaGGCUc--GGACgAAGGCCGACGAa -3'
miRNA:   3'- aCcUCGAaacCCUG-UUCCGGCUGCUa -5'
12362 5' -55.6 NC_003324.1 + 2188 0.67 0.58889
Target:  5'- aGGAGCUgcuc-ACGGGGCCGAgGAa -3'
miRNA:   3'- aCCUCGAaacccUGUUCCGGCUgCUa -5'
12362 5' -55.6 NC_003324.1 + 15464 0.7 0.441525
Target:  5'- aGGGGCga--GGcCAAGGCCGAgGAUa -3'
miRNA:   3'- aCCUCGaaacCCuGUUCCGGCUgCUA- -5'
12362 5' -55.6 NC_003324.1 + 38923 0.7 0.422137
Target:  5'- cGcGAGCUggUGGGAC---GCCGACGAa -3'
miRNA:   3'- aC-CUCGAa-ACCCUGuucCGGCUGCUa -5'
12362 5' -55.6 NC_003324.1 + 28448 1.06 0.001271
Target:  5'- uUGGAGCUUUGGGACAAGGCCGACGAUg -3'
miRNA:   3'- -ACCUCGAAACCCUGUUCCGGCUGCUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.