miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12363 3' -60.5 NC_003324.1 + 48704 0.66 0.460084
Target:  5'- --uGcgGCGGAGC-CGGaUGCGGGcGCc -3'
miRNA:   3'- ucuCuaCGCCUCGcGCC-GCGCCCuUG- -5'
12363 3' -60.5 NC_003324.1 + 48960 0.66 0.413286
Target:  5'- -uGGAUGCGG-GCGaaGGCGCGauuGAGCg -3'
miRNA:   3'- ucUCUACGCCuCGCg-CCGCGCc--CUUG- -5'
12363 3' -60.5 NC_003324.1 + 2355 0.66 0.413286
Target:  5'- -cAGggGCGGGuCGCGGUcgcuGCGGGAGu -3'
miRNA:   3'- ucUCuaCGCCUcGCGCCG----CGCCCUUg -5'
12363 3' -60.5 NC_003324.1 + 31319 0.67 0.404284
Target:  5'- ---aGUGCGGccggcGGCGCuGGCgcugGCGGGGGCa -3'
miRNA:   3'- ucucUACGCC-----UCGCG-CCG----CGCCCUUG- -5'
12363 3' -60.5 NC_003324.1 + 21945 0.67 0.395406
Target:  5'- -uGGAUGCGG-GCcucucgucgGCGGCGCGaugcaccuuGGAGCc -3'
miRNA:   3'- ucUCUACGCCuCG---------CGCCGCGC---------CCUUG- -5'
12363 3' -60.5 NC_003324.1 + 44889 0.67 0.395406
Target:  5'- -----aGCGGuacGcCGgGGCGCGGGGGCu -3'
miRNA:   3'- ucucuaCGCCu--C-GCgCCGCGCCCUUG- -5'
12363 3' -60.5 NC_003324.1 + 12110 0.67 0.36118
Target:  5'- --uGAUcGCGGAGCGCgcggccucGGC-CGGGAAUu -3'
miRNA:   3'- ucuCUA-CGCCUCGCG--------CCGcGCCCUUG- -5'
12363 3' -60.5 NC_003324.1 + 5570 0.68 0.352952
Target:  5'- cGucGUGCGGAaagcagucuugaGCGUGGgGCGGGcGACg -3'
miRNA:   3'- uCucUACGCCU------------CGCGCCgCGCCC-UUG- -5'
12363 3' -60.5 NC_003324.1 + 5511 0.68 0.313077
Target:  5'- --cGAUGCGGAGaagaacucggcgcCGCaGGUGCGGGcGCc -3'
miRNA:   3'- ucuCUACGCCUC-------------GCG-CCGCGCCCuUG- -5'
12363 3' -60.5 NC_003324.1 + 32527 0.69 0.306405
Target:  5'- -----cGCGGGGCGaGGCaGCGGGAGa -3'
miRNA:   3'- ucucuaCGCCUCGCgCCG-CGCCCUUg -5'
12363 3' -60.5 NC_003324.1 + 57040 0.69 0.29912
Target:  5'- uGGGcUGgGGAGCgGCGGCGaGGGcGCg -3'
miRNA:   3'- uCUCuACgCCUCG-CGCCGCgCCCuUG- -5'
12363 3' -60.5 NC_003324.1 + 36709 0.72 0.19021
Target:  5'- cGAuGAUGCGGAuGCGCuGGCGCuGGuAGCc -3'
miRNA:   3'- uCU-CUACGCCU-CGCG-CCGCGcCC-UUG- -5'
12363 3' -60.5 NC_003324.1 + 28826 1.08 0.000339
Target:  5'- cAGAGAUGCGGAGCGCGGCGCGGGAACu -3'
miRNA:   3'- -UCUCUACGCCUCGCGCCGCGCCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.