Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12363 | 3' | -60.5 | NC_003324.1 | + | 28826 | 1.08 | 0.000339 |
Target: 5'- cAGAGAUGCGGAGCGCGGCGCGGGAACu -3' miRNA: 3'- -UCUCUACGCCUCGCGCCGCGCCCUUG- -5' |
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12363 | 3' | -60.5 | NC_003324.1 | + | 36709 | 0.72 | 0.19021 |
Target: 5'- cGAuGAUGCGGAuGCGCuGGCGCuGGuAGCc -3' miRNA: 3'- uCU-CUACGCCU-CGCG-CCGCGcCC-UUG- -5' |
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12363 | 3' | -60.5 | NC_003324.1 | + | 32527 | 0.69 | 0.306405 |
Target: 5'- -----cGCGGGGCGaGGCaGCGGGAGa -3' miRNA: 3'- ucucuaCGCCUCGCgCCG-CGCCCUUg -5' |
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12363 | 3' | -60.5 | NC_003324.1 | + | 57040 | 0.69 | 0.29912 |
Target: 5'- uGGGcUGgGGAGCgGCGGCGaGGGcGCg -3' miRNA: 3'- uCUCuACgCCUCG-CGCCGCgCCCuUG- -5' |
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12363 | 3' | -60.5 | NC_003324.1 | + | 5570 | 0.68 | 0.352952 |
Target: 5'- cGucGUGCGGAaagcagucuugaGCGUGGgGCGGGcGACg -3' miRNA: 3'- uCucUACGCCU------------CGCGCCgCGCCC-UUG- -5' |
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12363 | 3' | -60.5 | NC_003324.1 | + | 5511 | 0.68 | 0.313077 |
Target: 5'- --cGAUGCGGAGaagaacucggcgcCGCaGGUGCGGGcGCc -3' miRNA: 3'- ucuCUACGCCUC-------------GCG-CCGCGCCCuUG- -5' |
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12363 | 3' | -60.5 | NC_003324.1 | + | 12110 | 0.67 | 0.36118 |
Target: 5'- --uGAUcGCGGAGCGCgcggccucGGC-CGGGAAUu -3' miRNA: 3'- ucuCUA-CGCCUCGCG--------CCGcGCCCUUG- -5' |
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12363 | 3' | -60.5 | NC_003324.1 | + | 21945 | 0.67 | 0.395406 |
Target: 5'- -uGGAUGCGG-GCcucucgucgGCGGCGCGaugcaccuuGGAGCc -3' miRNA: 3'- ucUCUACGCCuCG---------CGCCGCGC---------CCUUG- -5' |
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12363 | 3' | -60.5 | NC_003324.1 | + | 44889 | 0.67 | 0.395406 |
Target: 5'- -----aGCGGuacGcCGgGGCGCGGGGGCu -3' miRNA: 3'- ucucuaCGCCu--C-GCgCCGCGCCCUUG- -5' |
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12363 | 3' | -60.5 | NC_003324.1 | + | 31319 | 0.67 | 0.404284 |
Target: 5'- ---aGUGCGGccggcGGCGCuGGCgcugGCGGGGGCa -3' miRNA: 3'- ucucUACGCC-----UCGCG-CCG----CGCCCUUG- -5' |
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12363 | 3' | -60.5 | NC_003324.1 | + | 48704 | 0.66 | 0.460084 |
Target: 5'- --uGcgGCGGAGC-CGGaUGCGGGcGCc -3' miRNA: 3'- ucuCuaCGCCUCGcGCC-GCGCCCuUG- -5' |
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12363 | 3' | -60.5 | NC_003324.1 | + | 2355 | 0.66 | 0.413286 |
Target: 5'- -cAGggGCGGGuCGCGGUcgcuGCGGGAGu -3' miRNA: 3'- ucUCuaCGCCUcGCGCCG----CGCCCUUg -5' |
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12363 | 3' | -60.5 | NC_003324.1 | + | 48960 | 0.66 | 0.413286 |
Target: 5'- -uGGAUGCGG-GCGaaGGCGCGauuGAGCg -3' miRNA: 3'- ucUCUACGCCuCGCg-CCGCGCc--CUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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